BtaINT0011179 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45169624-45170203:+
Coord C1 exon
chr7:45169624-45169846
Coord A exon
chr7:45169847-45169981
Coord C2 exon
chr7:45169982-45170203
Length
135 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
GCTCCCTTGTCCTCCTGCAGCTC
3' ss Score
9.93
Exon sequences
Seq C1 exon
GTTCCTGCGCGTGCTGAGCCGGTCACTGCCACTCTTCCTGACACTGGCTTGGATCTACTCTGTGGCGTTGACGGTGAAGGCCGTGGTGCGTGAGAAGGAGACTCGGCTGCGCTACACGATGCGCGCCATGGGGCTCAGCGCCACTGCACTGTGGCTGGGCTGGTTCCTCAGCTGCCTCGGGCCCTTCCTCCTCAGCACCGCGCTGCTTGTGCTGGTACTCAAG
Seq A exon
GTGCGTGCACCCCCGCCTTGCCGACTCGGGACTGGTGCGTGTGTACGGGGAGGTAACGGGCAGGGGGCACCTCGCGGGGTTGCTCGTCCCTAGGCGAATCCGCGCTCTCCCTCCAGCTCCCTTGTCCTCCTGCAG
Seq C2 exon
CTCGGAGACATCCTCCCCTACAGCCACCCGGGGGTGCTGTTCCTGTTCTTGGCGGCTTTCGCTGTGGCCACAGTGGTCCAGAGTTTCTTGCTGAGCGCCTTTTTCTCCCGCGCGAACTTGGCAGCCGCCTGTGGGGGTCTTGCCTACTTCGTACTCTATCTGCCCTACGTGCTGTGCGTGGCCTGGAGGGACCAGCTGCCAATGGGCGGCCGCGTGGCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(33.8=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGCCACTCTTCCTGACA
R:
CAAGAACAGGAACAGCACCCC
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]