BtaINT0011186 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45165859-45166270:+
Coord C1 exon
chr7:45165859-45165952
Coord A exon
chr7:45165953-45166128
Coord C2 exon
chr7:45166129-45166270
Length
176 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
CACACCTGGTGTCCCTGCAGGTC
3' ss Score
11.1
Exon sequences
Seq C1 exon
ATCCAACTCTTGGTGGAGTTGTTGTGGCCGCTCTTTCTCTTCTTCATCCTGGTGGCCGTTCGCCATTCCCACCCCCCACTCGAGCAGCATGAAT
Seq A exon
GTAAGCCCCCAAGCGTCCAGAGCTTTGGGATTAGGATTAGCAGTGGTCACTCTATGCACAGGGGCCCCAGTGAGAACCCGGAGCACAGACCGGACGCTCAAATAATGGCTGAGGGGGACACTCTGTCACTGGGGGTGGGGACTCAGCCAAGAACCCCACACCTGGTGTCCCTGCAG
Seq C2 exon
GTCATTTTCCCAACAAGCCGCTGCCCTCAGCAGGCACCATCCCTTGGCTCCAGGGCCTCATCTGCAATGTGAACAACACCTGCTTCCCGTGGCAAACCCCTGGCGAGGAGCCTGGCGTCCTCAGCAACTTCAAGGACTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGGTGGAGTTGTTGTGGC
R:
GGGAGTCCTTGAAGTTGCTGA
Band lengths:
228-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]