GgaINT1005127 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2833894-2834230:-
Coord C1 exon
chr28:2834137-2834230
Coord A exon
chr28:2834036-2834136
Coord C2 exon
chr28:2833894-2834035
Length
101 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
CCCGTCTCTCTCCCCCTCAGGCC
3' ss Score
12.29
Exon sequences
Seq C1 exon
GTGCAGTTGGCCATCGAGCTGCTGTGGCCGCTCTTCCTCTTCCTCGTGCTGGTGGCGGTGCGGCGCTCCCACCCGCCCTTCCAGCAGCACCAGT
Seq A exon
GTGAGTGTTGCCATGCCCTGCTCCTGCCCTCGTGCAGGGTGGGGACCAGGGGCTCCCCGTGGAAGCGGTGCAGCCCCCAGACCCGTCTCTCTCCCCCTCAG
Seq C2 exon
GCCATTTCCCCAACAAGGCGTTGCCGTCGGCCGGGACGCTGCCTTGGCTGCAGGGCATCCTCTGCAATGTGCGCAACCCCTGCTTCCAGCAGCCCACCCCCGGAGAGACCCCCGGCACAGTGGGCAACTTCGGAGGCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGGCCATCGAGCTG
R:
ATGGAGCCTCCGAAGTTGCC
Band lengths:
234-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]