BtaINT0013095 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018986 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:62503924-62506929:-
Coord C1 exon
chrX:62506791-62506929
Coord A exon
chrX:62504075-62506790
Coord C2 exon
chrX:62503924-62504074
Length
2716 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GTGCTTTTTCATTCATTTAGTGA
3' ss Score
7.09
Exon sequences
Seq C1 exon
ACTGCATTGATAGATATCAACTGTGTTAAACATATCATTTATGTGGACAATAAGACTATCAATAAAGCAGAATACCCTGAAGGATTTGAGATTCACAGCATGCAATCAGTAGAAGAGTTGGGATCCAAGCCAGAAAACT
Seq A exon
GTAAGTAAAGCAAACAAATTTATTAATTGATTCAAGGCTTATTATTCCAGTAAATTAAAGAAATAATACAAGTGAAAACTGTTAAGTTCTCTGATTTAAAAAAAAGGTTTGTATAACTCAATAAAAAATAACATGAAAAATGTTTAAAAACTATCAAGACCATATAATATTAAGATTTTCTCTCCCTCCTCAAAAAGGTAACCACTGTTTGAAAATTTACTAAATTACTGAGAAGTATTCAATGGTTCAGGGCTTCCCTGGTGGCTCAGATAGTAAAGAATCCGTCTGCAATGCAGGAGACCGGGGTTCAATCCTTGGGTTCGGAAGGTCCCTGGAGAAGGGAGTGGCTACCCATTCTAGTATTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGCAAACTACAGTCCATGGGGTTGAAGAGAGTTGGACACAACTTAGCAACTAAGCATGCATGCATTCGATGATTCAGATTTATGGCAGCTGCTGCCAAACTTTCTTCCCCCCCCTTTTTTTTTTTTTTTGTTAAAAACCTACTATAACCTTCCAGTCTGAACCTCATGTAAGGGACAGATCTCAGGCCTTCCATTCAGTAAAATTTTCCTTTATTTTTTTTAGTGCTAATGCTACTGATTTTAATCATATCTCTGAGGATACAAACCATAAATAAAACCATACTTGGATTTATTCTACTACTGGTATGGTAGTTGGTATTCCATTTGAAATAAGTTAAGTGTGTCATATCAAAATGTCAGTTGGTCATCAGGTCAGAGAGGGTTGAACAGTTGAAATATTCCATTTAAATTATTTTCTTTCACATGTTTAATGAGAAGATCACAATACTCTGCTAGATGAGGAAGCCAAGTCTTTTATAACAGGCAGTCAGCATGCCTGCCCTTTGCTCTGAGGAAAAGTATTATCTTTATTGCACTGGACAGTGAGCATGCCTGTTCTTTGCTCCAGAGGGAGACACTTTTTCTGTCTTCCAAGGCTGCTCACTGTGGAATCATCCTTGAAAAGATAGTCCAGAATAAAGTCAGTGCCTCTGCTCACAAGATGTGCAGAAACTCAACAGACCCATGGAGAGTTGTGTCTCAACACCAGGTTGACACTGCAAGATTGGGATAAAGTTGACTGACAAGTCCTGATTGGTTGGGATTTGTTGGCATAAAACTATGGGAGGTAGGGGTCCTCATAATTTTGTGTGAGCCGTAACATGATAGACCCACATATCCTACCTAGTCCACTCATCTCTACCTTCTTTTATTGTATTTTACAAATGCATCCATCCATAAATTATTAGGGGGAAAAAAGGTCCTCATAGTTTGAGAAGCACAACTCTAGCAGACAGGTTAGCAAGCTTCAACCTGCATCTGTTTCTCTAAATGAAGTTGGATTGGAACACAGTCACATCCATTTGTTTAACAATTGCCTATGGTTTCCTTCACTCTCCAGTAACAAACCTGGGTAGCTTTGGCAGAGAGACCATACGACCCTCCAAGTTTAAAATATTTACTCTATGGTCCTTTGCAGTAAAAGTTGGCTGATCCCTGCTCAAGACAGCTAACTGTAATCTGTTGGGAAGACCTCTCTATTTCTTTCCCCTAATCATTCAACAAGCAGAGGCGGCACTGGAGCTCAGGACACAAGATGATTAAACGTTCCTACCTGAAGGCAGACGGCAAGAAGAAACAAAGTTTAGAAACTGTTTAGATATTACCTTTGGTGGGAACTGAAGGCCATCTAAGCCCCTCTAAATTGTCTCTTTTTCTTGGTTTCCTAAAATTCCTGTTTGATTTTGATTAAAAAGAATCGAAGTATGGTCTGACCCTGATAGGGAAAGAAGCATTAATTCTGAAAGACCCAAAAGAATCCCCAATCCAGACACATACCAAATATTCTAACTACAGGCATGAGTGAGTGTATGTGTGTGTGTAGCAGAGAGAGAAACAACTTCCTGTTACAGTTTTTATGTCACTGCACTTTCAGCAGTTTCAAGAAATGATTTCCTTTATAGATTTCAAGAAGCAACCGTCAAAACACAGACATCATTTTGGTTTGATTTCCTTTGGATTTTACTTGCTACTTGGAATCTAATTAAAAAAATATGTTAAATGTATAATGGTTATCTTATTGTTATCTTACTCAACATCCATGGTTCAATTATTTTTTAAAATAAAATTATTTTTCTAAAAACTTGAAGAGAGTCAGGTCCAGTTGGTTTTCAATCAGGAGTGTGTATGAGTGTCACCTGTGGAGCCTGTGATCCATTCCAGACATACAAAACCAGAATTTTCAGAGCTAGGGTCCAGAGATAGTATTTAAGTTGCACAGGCGATTCTTATGCCCACCAGTGGTTAAGAACCAAAATCTAGTCCAACCATTTCATTTTAGACATGAGAAAACTGAGGCTTGAGGAGCTCACACACAGTACTCTATCGTCCTAATTCTCCAGATCTTAGATATCTTTCCACAACAAAACCCTGTAAACAGCACTGTGGAGAGGGATTAGGCTAAACATTCAGAAAATGGGCCAAATTAAGTTTGAAGTTCTCATTGCAGGTAACCAGAATTGGATAACCATTTTCTTGTTGATGATCAATAGAGAGTATTTGTTTTAAATAGTTCATCATTACACCAGAATCTAAAAATCTTATCTCTGTTTAACAATTTAACTTTTAAACTAAAGGAAATGTGCTTTTTCATTCATTTAG
Seq C2 exon
TGAGCGTTTCTCCAAATAGACCAACTCCTTCAGACTTGGCTATTGTCATGTATACCAGTGGATCTACTGGCCGACCTAAGGGAGTGATGATGCATCATAGCAATTTGATAGCTGGAATGACTGGCCAGTGTGAGAGAATTCCTGGGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018986:ENSBTAT00000054636:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]