HsaINT0002917 @ hg38
Intron Retention
Gene
ENSG00000068366 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:109678265-109681136:-
Coord C1 exon
chrX:109680998-109681136
Coord A exon
chrX:109678416-109680997
Coord C2 exon
chrX:109678265-109678415
Length
2582 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTTTTCATTCATTCATTTAGTGG
3' ss Score
6.47
Exon sequences
Seq C1 exon
ACTGCATTGTTAGATATCAGTTGTGTTAAACATATCATTTATGTGGACAATAAGGCTATCAATAAAGCAGAGTACCCTGAAGGATTTGAGATTCACAGCATGCAATCAGTAGAAGAGTTGGGATCTAACCCAGAAAACT
Seq A exon
GTAAGTAAAGCAGTAAAAACAATTTTATTTACCTATTCCAAGTTTGTTATTTTGGTAGGTTAGGGAAACAAATGACATGAGTAAATCCACAAAAGTTCTTTGACTGAAAAAAAAAAGTTCAAAAATCTTTAAAAACCATCAAGACCATATATGATTAAGATTTTCCCTCCATTTCTCCTCAAAAAAAATAAGTTAGTAAATTTCACTAAGTGGTTGAGATGTAATCTGTGGTTCAGACTTCATGGCAGTTGCTGCCAAATGTTTCTTCATTTTTTAAATAACCCACTATAACCTTCCAATTTGGGCCTCATAAAAGAAAAATATTTCAGGCCTTCCATTCAGTAAACTTTCTGAAATAAATGCTTAATGCTAGTTATCTTAAGGATGTTTCAGAGGATGCAAAGCTGTTTACCAAGATTAATGCTTGGATTTATTTTACCACTGAGGTGGTAGTTGGTATTTCATTTGAAACAAGTAAGTGTACCTTGTAGCAAAATGTCAGTTGGCCATCAGGGCAGAGAGTTGAGGAAATTAATACTCCATTTGAAGAGTTTTCTTATTATGTTTAATGCGATGGTCAAAATACCATACTATAATGAGAAAAGGATTCATTTTTGCAGGAGAAAATGTTGGTCGAACCTCTACTCAGCTTCTGAACATTTTACCATTAGAGAATGAGCATGCGTTTATAATAACAGGTGTTATTATACACATCTGCCATGTGTCCAGAATGGCAGAGAGTCAGATTTTACCCTGCTTGCCGGCAAACAGATGAGCCTGCAAAACTTCCTGGTGCCATAGACTTTTGGGTCTGAGATGAGGGACAGTTTTTTACTCACAACAATAGCAGTAGCCAGAGTATCATATCAGCATTTGTGTCATAAGAGAGGAACTCTGAGCTTAAAGAGCCTGAATATCTTATTATCTTATTGTACTGGACAGTAAGCATGCCTGCTGTTTGCTCTGGGGAGAGACACTATCTCTGTGCAAATATCCTTGTAAAGATAGTCTGGAACAAAGTCAATGTCTCTGCTTGCAAGATGTGCAGAACATGAGACCCATAGAGAATTGTTTTTCTACACTAGGTTGACCCTGTAAGATTGGGATAAACTTGACTGAGAAGTCCTGATTGGTAGGGATCAGTTACAGTTCTGCTGATTGACCACAAAGGGTGTTGGCAGCAAGCTAAGGGGTCAGCAGTCTTCATAATTTTGTGTGAGCAATAATGTAATAGGCCACATATCCCACTTAGTTCTACTCATGTCTGCAATAGATAGGATACATATGTTTTTGTGGTACAGACAGTTATTGTGATGCCACTTTTTTGCATATTTACTTAAAAGTGGGCAGAAGCAAAGTATCACATGTGCTTAGATTAAGAAGAATTTAGCTACTGCTGTTGCTTTGGTTAATCATCAGAGGAAATATGCAGTCCTTATTTGCTTGGTTTATAAACTATGACTATATCTTTAAAAAGCATTAAAATTAGCCAGTTTAAGTGTAACTATCTTTGTTTCAGTGGTATAGCTCACTGTTTTAAAAAAATGTTATTTTAACTGGTATATAAAAATGTAAATAATTTGTGTAAAGATTTTTAAATGTGATAATCCTGTTAAACTTGTATTTCATTCTGATGATATATATGTGGCTTCTTAGCCATTTTGGTATATTCTCGGAAGGAAAAGTGGTTACTAGGCTAGCACTATACACTGTCTTGAAAGTGGAAGCTCCAGGGTTCTGTTTAAAACTTATCACCTTCAAATGTTAGCATTGAAGTCACCTTAAAGATCAGATCCAGTGGTTTTCAATCAGGGGCATATATGAGAATCACTTGTGGAGCTTTGTTCTATCCCAGACATATTGAATCTGAATTTTCAGAAAGGGGGTTCAGAAATAATATTTTATTTAAGTTCTGCACGTGATTCTGATACCCACTAGTGGTTAGTAACCACAATCTGTCCAGCTGTCTTATTTTAGAGATGAGAAACTGAGGCCTAAGAAGTTTATACACATACTCTGTCCTCCTGATACTCCAAAGTCCCAGAAATCTTTCCACAACATTGCTCTGTATACAACACTGTGGAGAGGCAATGCACAGACAGAGATTAGGTTAAACATCCAGAAAATGGGCCAAATTGAGTCCAAAATGCTCACTGTAATCAGAATTTGATAAACATTTTTGTTTTCTAGCCCAGGCTGGAGCACAATGGTATGACCATAGCTCACCATAGCCTCAACCTGCTAGGCTCACCCAGTCCTCCTGCCTTATCTTCTTGAGTAGCAAGGACTGCAGGTGCATGCCACTGCATCCGGCTAACTTTTTTAGTTTTTGTAGCGACAGAGTCTTGCCATGTTGGCCAGGCTGGTCTCGAAATCCAGGGCTCAAGTGATCCTCCCACCTTGGCCTCTCAAAGTACTAGGATTACAGGCATGAGCCACCTCACCCAGCTCGTTTTGATGATTTAAAGCAAATACTGTCTATTGATAGCTTATCGTTATGCAAAATCTAAATATCCTATTATTCTTTAGTAATTTAACTTTTGAACTGAAGTAAATGTGATATTTTTCATTCATTCATTTAG
Seq C2 exon
TGGGCATTCCTCCAAGTAGACCAACGCCTTCAGACATGGCCATTGTTATGTATACTAGTGGTTCTACTGGCCGACCTAAGGGAGTGATGATGCATCATAGCAATTTGATAGCTGGAATGACAGGCCAGTGTGAAAGAATACCTGGACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000068366:ENST00000348502:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.235
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.1=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development