MmuINT0010180 @ mm10
Intron Retention
Gene
ENSMUSG00000031278 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:MGI Symbol;Acc:MGI:1354713]
Coordinates
chrX:142343307-142345566:-
Coord C1 exon
chrX:142345428-142345566
Coord A exon
chrX:142343458-142345427
Coord C2 exon
chrX:142343307-142343457
Length
1970 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
AAATGTACTCTTTTCTGTAGTGA
3' ss Score
4.73
Exon sequences
Seq C1 exon
GCGGCCTTAGTAGATATCAATTGTGTTAAACATATCATTTATGTGGATAATAAGACTATCAATAGAGCAGAGTACCCTGAGGGGCTTGAAATTCACAGCATGCAATCAGTAGAGGAGCTGGGAGCCAAGCCAGAAAACT
Seq A exon
GTAAGTAAAGCAATCGAAATTAATTTCCTCGTGGACTCATATTTATTATTTTAGCAGATTATTAAAAAGTAACATGAGTAAATGCTGGAGCTTTTTGATTTAAAAGTAATCAAGACTGCACATGACAGAAAAATTCTTTTTCCTTTTCCTAAAGAAGGCAATCCTGCCCGAATTTCTTGAAGACAGCAAGCAGACTTTAGGTTAGAGATGAGGCAGGCTTCTTTTTTTAATTGGAAACAATGGTCAGAATTGTAGTGAGATTTTTTTTTTCAAGTATATGTCCTGCCGAAGTGAGCACAAAACACATATTTATTATAAGAATATGTTTTCATTTTAAACCCATGTGTGGGATATAAGGCTGCTTGAAATTTGCACAGCAGCTGACTATGATTTGTCTTGCTCTGGCAAGTTTGTGGTTTTGCCAGCTGCTAATAGTTTCTGAGAGTGTGTGACATTTGGAATTCTGGAGACTCTTTAGACAATATATAAATGCCTGGGCCCTGAGAGGTGGTGTTGTTGTTGGCTTGTGGGGTGTTGGTTGGTTGCTGTTGGTTGTGGATTATTAGGCAGTTTTGTGCAAAGAAGAAACAGCAACAAGAAGTTAGATATCCTGATGGGGAAGATCAAACTTGCTTCAAGGAACTCAGTGCCCCTAATCATCAGGGAAGTAGTCTGGCAATAATGACACCTCTGTCCCCTTTATATTCCCCCCCCCCCCCAATCTAGTGCTAGTGGGTTGAAAGGGTGGAAGAAAAAAGAACCCATAAAGTAGCCAAAAGTCTGGCTACAAAGAGTATCATGTTAGCATTTGTATTGTAGAAAAGAAGCCCCAAGGCCAAATCTTTTATTCTTTTTACTGTTCTGGGCAGTAAGCATGCCTGTTGTTCATACTGGAGTGTATACATCTCACTGTACATCCTTTGAACACATCAGTATCTCTTGGCTTGATGCACGGGAATGAATATAAGAGACCCATGGGGAATTGCTTGTTATCATCAGGCTGATGCTGTGAGATTAGGGCATGCTTGCCTGGGAGGTTGGCATCCACAGGGTCTGTTACTGCCAGTTCCGATGATTCACCAAAACGTTTGACACAAAATCTTAGAAAATATTTACCGGTCCTCACAAGTTTGATTGACTACTGACAAGAGTCACTGACATGTATGTGTTTGTTTCCAGGATAACCAGGATCCATATACTTTTGTTATACTACTTTACCTGAGTATAGAGTCATTATCATGTGTCATAATAATCAATATTATATGTGGAGCTATGATACATGTTGTAGTGATAGTTTACTCAAGTAGGTAAATATTACAAGGACACATTTTGCAAATGTTTACTAAAAAATAGGCAAAGATGAGAAATGTCATATTGTGTATTTGGTCTGGTTCTTCAGTTGATCCTCAGGTGAATCCTTTTCCTTCTGGGATCCCACCAATGACTATGACCACACTGAAGGAGCATTTGATATAGCCTGTTTAAGTATGTAATTTTGAGTTTGGTCATTTCAGTGATATGCCTTGCTCTCCCCCACCCTCAGACAAGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCTCTCTGTAGACTAGGTTGGCCTCAATCTCAGAGATCCACCTGCCTCTGCTTCCAGAATTTTGGGATTAAAGGTATGTGCTACCATGCCCGAACTGAACCATTATTTACTGCTAAGGAATCTACACAGGATGCTATCCTTTCCAGTTTTCAAAGCCTTAAAAATCCTTCCCACTTCTATATATAACACTGTGAAGAGGCTTAGTCAGGTGGAGCTGAAAATAGGCTGGATTGAGTTTGAAATCTTTATTTCAATCAACTGGAATTTGATAACCATGCTTACTTATTCAACCAGACTGGTTTGGAAATTTGTAGAATTATATAAAATGAAAATAATCTTCTTGTCAAGTAATTCAATTCTGAGCTGAAGAAAATGTACTCTTTTCTGTAG
Seq C2 exon
TGAGCGTTCCTCCAAGTAGACCAACCCCTTCAGACATGGCCATTGTCATGTACACCAGTGGTTCTACGGGCCGCCCCAAGGGAGTGATGATGCATCATAGCAATTTGATTGCTGGAATGACAGGCCAGTGTGAACGTATCCCTGGACTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031278:ENSMUST00000033634:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.235
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCCTTAGTAGATATCAATTGTG
R:
AGTCCAGGGATACGTTCACACT
Band lengths:
287-2257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types