BtaINT0013142 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001417 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr25:18407052-18410018:+
Coord C1 exon
chr25:18407052-18407153
Coord A exon
chr25:18407154-18409890
Coord C2 exon
chr25:18409891-18410018
Length
2737 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GAGTGCTGTTCTCTTTGCAGAAT
3' ss Score
10.11
Exon sequences
Seq C1 exon
ATCATTGATGACAAGGGCAATATCCAGCCTCCCAACACGGAAGGAAACATTGGCATCAGGATCAAGCCCACCAGGCCCATAGGCCTCTTCATGTACTATGAG
Seq A exon
GTAAGAACACACCATCTGCTTCCAAACAGCTCCAAGAATCCTCACAGGGAGTTGTGTAGGTGATAACAGACTAAACTCAACTCTGCATTCTGAAACGTCTTCCATCTTCCTTTATTCACGCCAGGTCAATGAAATCTGTTCTAATTAATCTCAAAGCCCTTATTCTCACATCCCTTTCTACATAACCCATCTGACACTTACAGGATGACTAATGGAGTAGAAAACAGCTTAACTTCAGAACCAACAGACTTGAAGTCCAACTATCTTTTATGGTTAAGAATGTTGGCTTTGAATGGGTTCAAATCATACCAACATACCACCAACAGGATGGACACAAATCTATTAAATCTTGCTGAGCCTCCAGGGGTGTCTTTATCCCCTATTTCAGAGGAAAAAACTGCATATTGAAAAATTGACATGTTTTCCCTAAGACAAAATAAAGGGCAGGATTAGAGTTCAAGGTGATGTGTTTTAGGCCCCAAACTCTAAATGAGAAATTCAGAGATTAGAGAAATCTACAATAAAGGAATCTACAATAAACATAAAGAAACCTGCTATAACTCTTCATCAGACAAACTCTGGCTAGCAGTGGCCACCGAAAGGAAATTCTTAGCTTCCAAGATTGACTGTGGAAGTGTAGACAAGCCCTGAAACTGATCTCAGACTCCATCTCCTTTCTGTAAAGTCACAGCCACTGGTGTCATTGTTGTCCTCACACTATGGCCTGAAGTGGGAAGGGAATCCTGGTTCTCTCATGGTCCTATGCTGAGAAGCAAATATGCAAGTCTTAGCCTTATTCTCAGTAGCACAATTTAAAGGTTGGATAAAAGAGAAATACAGAGTAACAGGCATACAGATCATCAGTCCTTAATCCTGTTTACAAGTTAGAATGATTTGAGGAAATATTTTTTAAATGGTAGGATCCAACCACAGAGATTCTTGTTAAATTGAACTGGGGTGGTCAAGAGAAATTACTTTAAAAAAATTGTACATGACGTATTTTATTTTGCAAAAATGTCTTCACATATGGCCACATCAATTTCTCCCATTTCACATGTTCTCATGGCAAAGAGACATCACTGTTCCATTAAGATTTGTTGATTTATATTCTGTTCTTTCATTTCCTTTTTCTTGAAGTAAAATATATACATACATGTAACATAAAGTTTACTCTTTTCACTATTCTTGAGCATACAATTCAGTAGCACTGAGTAAAATTTAGAATATTGAACAACCATCACCCCTATGCATCTGCAGAAAAATTTCACCATTCCCAGAAGAAATTCTGTTCCCACTGAACTGTAGCTCTCTACTCCCCTTCCACGTGCTTGTTCTATCCATTATTGAAAGTAATATATTGAACTCTTCCATTTTTATTATAGAACTGCGTATGTCTCCCTTGAATTCTGTCAATGTTTACTTTATATTATTCTGATTTCTCCCTTTATATAATTCTGATTTCTCCCTGTCAGTGTTTGCATCAAATATTTGGTACTAGGCTGTCAAATGCATATTTGCTTCTAAACATTATATAGTCTTGGTGAGTTAACCCTTTTTTCAATATATAATATCCTTTTCTTATCACTTGTAACACATTTAACTTCAGGTTTACTTTGTTTACTATCTGATAGCTATCTCAGCTCTCTTTTGGCTCCTAATTGAAGGGAATATCTTTTTCCACACATGTGAGTGCAGATAAAAAATCTGAGTAAGATTTGTGGATGGTATCAATATCAGTGTCCTAGTTGTGATATTGAACATTATTTTTGCAAGATGTTACTATGGGGAGAAACCATGTAAAGGTAGGTAAGATCGCTCTTATTATTTCATATGAAAGTGAAAGTGTTAGTTGCTTAGTCATGTCCAACTCTTTGGGACCCCATGGACTGTAGCCCGCCAGGCTCCTCTGTCCATGGAATTCTTCAGGCAGGAATACTGGAGCTGGTTGCCATTTCCTTCTCCAGAGAATCTTCCCAACCCAGGGATTGAACCTGGGTCTCCTACATTGCAGGCAGATTCTTTACCATCTGAGCCACTAGGGAAGCCCATATTATTTCTTATTCTGTGCTTAGTCATTTAGTTGTGTCCCACTCTTTGTGACCTCATGGACTGTAGGCTGCCAGGCTCCTCTGCCCGTGGGGATTCTCCAGGCAAGAATACTGGAGTTGGTTGCCATTTCCTCCTCCAGGGGATATTCCCAACCCAGGGATCGAACCCACCTTTCTCACTTCACAGGTGGATTCTTTACCATCTGGACCACCAGAGAAGTCCAATTATTTCTCATAACTGCATGCAAATATACAATTATCTTAAAAGTTTAATTAAAACACCATTTTCACAGTCTTTGTGTGAGGCTCAAATAGGTAATCTTTTGAGAAGAAAATTCATTCAGCAAACATTTATTGACATCTCCCATCTGTCCAGGCACTGTGTGAATGCTGAGCTTATAAGAGTGAATAAAATAAATGGAATTATACTCTGGTAGAAATTTTATTCTACTGGAGTACCACACAAAACTGAGTTGTTATTTTTTTTAATGCTCTTAAAATTTGCTTAGTATTGTTCACTATTTTACCAGTAGCATGCATTGAGTGCTTGCATGCAATGAAAATAGAGAGATATAAAAACTGCCCAAGTCAGGTAGAGCAGGATTTGAAGCCAGTATCTGAACCCTGTGTTGAGGCTCATCATCTCTAAACTCATTGCTTTCAACAAAGGAGTGCTGTTCTCTTTGCAG
Seq C2 exon
AATAACCCAGAGAAAACAGCTGAAGTGGAATGTGGGGACTTTTATAACACTGGGGACAGAGCAACTATTGACGAAGAGGGCTACTTCTGGTTCCTTGGGAGGAGTGACGATGTCATCAATGCATCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001417:ENSBTAT00000001859:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]