MmuINT0010231 @ mm10
Intron Retention
Gene
ENSMUSG00000033533 | Acsm1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:MGI Symbol;Acc:MGI:2152200]
Coordinates
chr7:119655982-119658427:+
Coord C1 exon
chr7:119655982-119656083
Coord A exon
chr7:119656084-119658299
Coord C2 exon
chr7:119658300-119658427
Length
2216 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
GCACTTTGTTGTCTTTGCAGAAT
3' ss Score
9.69
Exon sequences
Seq C1 exon
ATCATCGATGAAAAGGGCAACATCCTCCCACCCAACACTGAAGGATACATTGGCATCAGGATCAAGCCCACCAGGCCTCTAGGCCTCTTCATGGAATATGAG
Seq A exon
GTAATAGCATCCCACCAACCCAGTCTCAAGAACATATGGGGGTAGCTCTGTATCCTGAGACTTCTTTGAGTCATCTCCTCTTCATTCTAGCCTAATGCAGTCCATGTTAATGACACTCATCTAAGCTCTTTGGCACATTGTCACAGTCCTTCTGTCCAAGCCCACTTGGGGATTTAAGAGCTAAATTATGGGATAGAAAGATTGACCTTAGAGTCACCAGACTTGGCCTCCAATAAACCCAGCTGTCCCTTCTCAGAGGGAAAACTGAAGTGTTGTATGTCTTACTCATGCCAAATGATCAGAGCAGGTCTAGGATCTGCATCTTTTTAGGTGTCCTGCTCTAAATTAGAAATTGGGGGACTGTAGAAAGCTGGGTTGAATTGGAAGAAAACCTGCTGAAATTGCTGATCAAACAAACTCTGACCATCCTAGTTAGTGGTGATCCCAAGAGGGAATTCTTGGACTTCAAGATGGACCATTGAAGTGTAAGCAGACTCTGAAACTAACCTCAGGCTCCATCCCCTTCCTCCACACACTTCTCACCTGACTTTATGGGTTTGTCTAGAAATCCTAAGTAATTGCAATAGGCAGTTATGAGAACCACATATACATGCACATCCATGACTCCTAAACTTAGGTATTCTATATTATTTATAACATATAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGGTATGTGTGTGTTCAGTTTTCTTTTCTCCCTCTTAGAGTTTTGTTTCTGAGAATTAATACTAAGACCCATGAAGTTGTTTTGGTCACCATATCACAATAACTCAATGCCCCCTGGAGGCCACAATATAAGGACGCCTCCAATGAGACCTGATTTTTTGTTGTTGTTGTTGTTTGTTTGTTTGTTTTGAAGTAAAATTGAATATAAAGTTCATTCTACCATTTTCAATTGTGCACCTCAGTGGCATGCAAACAATTCATGACAGAGTGAAACCCTCACCCTCATCTATCTCCAGAAAATCTACACGCTCCAACTCTGTACCAGACGCACATTACCACTTAGTGCTTACCCCTTACCCCAGCATCTGATTAGCTCTCATTTGCTTTGTGGATTTGCCTATTTCAGATCATTTACATCCATGAGCTCATGTGACACAGCTTGTTCCACTAACCTCATGTATGGAAGCTTTTTCTGCCATAATGTATTTGAACGCAGCACCCCCCCCCGCCCCCAGTGCCCCACTTCCCCTCCTTTTGAGCCTCTAAGACTGCACCTTTTGGTGGCCTTGGGATGTCCTACAAGTCCCTTTCGCTCTGTTCACTTTGCTACCCTTCTCTTCTCTCTGTGTCTCTGTCTCTCTATCTTTCTGTCTCTCTCAGGACTTTTTTTTTTCAGTTACTGTATTTTTAGTTCCTTGTTTTTAAACCTTCTGGTGACATTTTTAATTTAGTTGTTTTCCCATATTTGGTCTTTATCCATAATATGTGTGCTAAACTATCACCTTGTAGCCCACACATATGTTCAATTACATTATACATCAAGAAAGAAACTAGAGATTGTGGAGCAGGAGTGAGTAACTTACAGAACGCCTTGTGAAGGATCGCCTGGTGGTGGCACTGCTCTGCAGGCTGCTGCTGTGGTAGCAGGATGAGGAATCATGTCTGCAATCAAATTTCATAACACATGCACACACACACACATGTAAAACCACAAGAAATCTGAGTGAGGTCAGAGAATGGATCAATGTCCATATCCTGATTGGAATATTGAACAATAGTTTTAAAAGACAATACCATTGGAGGAAACTAGATAAAGGGCCTATGGGATTTCTTGGTATTGTTTCTTATTCTAATTATTGTTCTTACTTTGTATTGTTTTGTATTGTCATAAAAAATGCTTAAGTTATGAAGCGCCTGCCTTGTCGGACTCCTGTGACGATTAGATTAGGTAGCACTTGGCAAAGGGAATTCACTACTGCTGCTGTTCTTCCCAGCTGTCTCAGTATTGAACACACTGAACATATCGCTAAGAATGGAAACTTTGTTCTGATGGAGAGTTGCATAAAAGTAAGATGCTATTTTTTAAATACGAGCTGAATGGTGCTCACAGATGGAGCTGCAGCCCACAGTGTTTAGGCTGGTTCAGGGGCCATGTGCAGAATTCAAACTCAGACATGACCCCAGGCTCAACTCTAACCTTCAACAAGGGCACTTTGTTGTCTTTGCAG
Seq C2 exon
AATAGCCCAGAGAGCACATCTGAAGTGGAGTGTGGGGACTTTTACAATAGTGGGGATAGAGCGACCATTGATGAAGAGGGCTACATCTGGTTCTTGGGAAGGGGCGATGATGTCATCAATGCTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033533:ENSMUST00000047929:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.209
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(10.0=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types