BtaINT0013342 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022244 | ACTN3
Description
actinin, alpha 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:165]
Coordinates
chr29:45241091-45241399:+
Coord C1 exon
chr29:45241091-45241237
Coord A exon
chr29:45241238-45241333
Coord C2 exon
chr29:45241334-45241399
Length
96 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGC
5' ss Score
4.14
3' ss Seq
CATCTGCTCCCCAACTACAGAAG
3' ss Score
6.35
Exon sequences
Seq C1 exon
CACATCCGCGTGGGCTGGGAGCAGCTGCTCACCTCCATCGCACGCACCATCAACGAGGTGGAGAACCAGGTACTGACCCGAGACGCCAAGGGCCTGAGTCAGGAGCAGCTCAACGAGTTCCGGGCATCTTTCAACCACTTTGACCGG
Seq A exon
GTCAGCAGGGGCCTCGCCCTGTGGGGTGGTGGACTTGGGGGCTGGCTGGGAGGCGGAGATCGGGGCCAGAGCCTGACATCTGCTCCCCAACTACAG
Seq C2 exon
AAGCGGAATGGCATGATGGAGCCTGATGACTTCCGGGCCTGCCTCATCTCCATGGGCTATGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022244:ENSBTAT00000030030:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF134991=EF-hand_7=PU(34.2=55.1)
A:
NA
C2:
PF134991=EF-hand_7=FE(26.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCACCATCAACGAGGTG
R:
ATAGCCCATGGAGATGAGGCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]