RnoINT0012635 @ rn6
Intron Retention
Gene
ENSRNOG00000019745 | Actn3
Description
actinin alpha 3 [Source:RGD Symbol;Acc:621792]
Coordinates
chr1:220121609-220121909:-
Coord C1 exon
chr1:220121763-220121909
Coord A exon
chr1:220121675-220121762
Coord C2 exon
chr1:220121609-220121674
Length
88 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
TATCTGTTTGCTGTCAACAGAAG
3' ss Score
7.27
Exon sequences
Seq C1 exon
CACATCCGTGTGGGCTGGGAGCAGCTGCTCACCTCCATTGCCCGCACCATCAATGAGGTGGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAACAGCTCAACGAGTTCCGGGCATCTTTCAACCACTTTGACCGG
Seq A exon
GTCAGTGGGGGCTAAGCCCTGTGGGCTAAGAGACTTGGGGACTGGTGGAATTTGGAGACCAAGCCTGATATCTGTTTGCTGTCAACAG
Seq C2 exon
AAGCGGAATGGGATGATGGAACCTGATGATTTCCGAGCTTGCCTCATCTCCATGGGCTATGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019745:ENSRNOT00000026812:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF134991=EF-hand_7=PU(34.2=55.1)
A:
NA
C2:
PF134991=EF-hand_7=FE(26.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCCCGCACCATCAATGAG
R:
TAGCCCATGGAGATGAGGCAA
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]