BtaINT0013463 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011909 | ACVR1
Description
Bos taurus activin A receptor, type I (ACVR1), mRNA. [Source:RefSeq mRNA;Acc:NM_176663]
Coordinates
chr2:39327108-39329753:+
Coord C1 exon
chr2:39327108-39327371
Coord A exon
chr2:39327372-39329541
Coord C2 exon
chr2:39329542-39329753
Length
2170 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCCC
5' ss Score
-0.59
3' ss Seq
CTTCTCTCCCCCATCTCCAGGGA
3' ss Score
10.39
Exon sequences
Seq C1 exon
ATGAGAAGCCCAAGGTAAACCCCAAGCTTTACATGTGTGTGTGTGAAGGCCTCTCCTGTGGGGATGAGGCCCACTGTGAAGGCCAGCAGTGCTTTTCCTCGCTGAGCATAAATGATGGCTTCCACGTCTACCAGAAAGGCTGCTTCCAGGTCTACGAGCAGGGGAAGATGACCTGTAAGACCCCGCCGTCACCTGGCCAGGCTGTGGAGTGCTGCCAAGGGGACTGGTGTAACAGGAACATCACGGCCCAGCTGCCTACTAAAG
Seq A exon
GTTCCCATGGACTTTTCTATTTCTAGGTCAAGGGTTTTAGTCAGTCTTATCCTGGTTCTTTGTGGGTTAAAAATGTGAGTAGCCACAAGGCTTTCCTCCTACTCTTTGAACAATGGGTGACAAGCAAGTTAGGTCCAGTGAGGAAGAGAAAGGCATGGCCTTTGGGAATCTATAACGAGGATGGGCGTATTAGGGAAAGTGAGCAGAGTGATATCTACTATGGGGACGATTTGGCAGACCAGATGTCTCTTGGTGTCATGAGGAGGTGAGTAGCTCCTGATACCTTTTTCTGAAAGGAGCTATGATATCATACTTTCTAAAACAGTTGTGCTTATTAGGTACTTGTCTCTATGTTGAGTATGTAGGGAAGAAAATGGAACATAAGGCTCTGGTATCTGAGAGGAATGCCTTCCTTCTTAAGAGGAAGGAGACAAAGCCATTCTCCTGTATCAGATGCCCAGTGATCTGTCACTGCAAATTGAACCTGGGTGAGATTTCATCTCAACCTTGTAGGTTATGTGGAATCTTCTCCATATTATAGTCAATATGGACTTCAGTCCTCTTCTGAAACTGTTTCCCCATAAAATGAGCCCTGAACTGCATCTCAAAGTCCCTACAAATATTAATGTACCTTAGTCTGTAGATTCAGCTCAAGCCAAATTTACTGTCTTAATATATAGCACATTTTTAATAGGTGTCCTTAATCAATCTTACACTCACACAAAAAAGAAACAAACTATAGGAGAGATTATGAGGAGCATCCAAGGCCAGAAATGCTAACTAGCAAGAGAGAGAGAGAGAGAAAAATGAAAACAAACAAACAAACAAACAAAAAACTGATATAAGATCATGTTGCATAATTCATAATTTTTAAAGTTATGGTGAGGACCTTAAGGTCTATAGAAAGGTTAAAGTCTGATAAGCAAATAGGATTGAATAATAGAGATTTTGTATTAAATGGTTAAAACTAAAAAGGGTACTTGATGGAATAAACTTTGTGAGTGAAACTGTGATTAATAGAGTGGATGGACCATGAAAAATGTCTGCATTCACATAAAAATCATGTCTACAGTATGAAAAGTTTCTCGTCTGCAGAAGACCCTGCCAGATTAGAGTTGTAGTACAAAATGTATTTACTTAAGGAGTTTCTAATTTAATTAGGGAGGCATGATATTTATAATTTAATGTTGTACATAATTAGTTTTATACTTTATCTTACAAATGACATGTACCTTGGAGTATTATGTGCCAAGTTGTTGATTAATTTGGATTTGGAAAGTTTAGAGAAATTTGTAAAGGAAATTCAGCTTGAGATTGGATGACTGAAGAGGCCAGGAACATTGAAAGAATAAGACCTTCGTGGGGAAGAACAGGGCTTGGTTGTATAATGTCTTAGGAGGGGGTCTGAAATTCAGAGGTGATAATTGCTTTGGGATCTTTTAACTATGACCTTCACTATCCAAGTAAGAAACTTTGACTTAACTCACTAGACAAGATGAAAGCCTCTGTGACACGTGAGTGTTTAGGTGAATGAACGCATAAATGTTTGAATGGATGATGTGATAATGTCTGAGCCAGAGAGTCAGTGTGTGATTAGGTGAGTGAGTGAATCAAAGAGTGAATGTTTTAAGTGAGTGAATTAATGTTGAATAAGTGAGTTAAAGAAAGTTGAATGAATAGGTTCCTAGGCATAAATCATGATGTAAAAATAGCAATGAGAATACAGCAATAGATATCCAAGGTAACACTGAAGAGAAGGCCCACAGATTGGATAATTTGGTCTTAACTCAGATAGCACTTTCTCATAGAAATACTGCAGCATAATATCTGTCTGTGAGGGCTTGATGATAAAACATCCTTACAGATCAAATCTTAATTTAATAAGGATAGTATCAGACTTATATAATACTTTATATTTTACAAACACTTTTCACACAGATGCATTAAGTTGGTTCTCAGTGGAATTTTTTCAAAATCCTATTGTATCTCAATGAATAATGGTTAAATGACTGGGCTGTTGGCCAGGTGTTATAAAGTATTTTAGTTTTAGCACTTTGCGACTTATAAAACTATGTGGTCGGGATCGGGAGCTACTTGTTAGGTATTGGTTATGCTAAACATTAAAAACAATGATCCTATAGCCAATTACTCTTCTCTCCCCCATCTCCAG
Seq C2 exon
GGAAATCTTTTCCTGGAACACAGAATTTCCACTTGGAGGTTGGCCTCATCATTTTGTCTGTAGTGTTCGCAGTATGCCTTCTAGCCTGCCTATTGGGAGTTGCTCTCCGAAAATTTAAAAGGCGCAATCAAGAACGCCTCAACCCCAGAGATGTGGAATATGGCACCATTGAAGGACTCATCACCACCAACGTTGGAGACAGCACTTTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011909:ENSBTAT00000015797:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=84.3)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(10.3=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]