RnoINT0012759 @ rn6
Intron Retention
Gene
ENSRNOG00000005033 | Acvr1
Description
activin A receptor type 1 [Source:RGD Symbol;Acc:620200]
Coordinates
chr3:44462620-44464960:-
Coord C1 exon
chr3:44464697-44464960
Coord A exon
chr3:44462832-44464696
Coord C2 exon
chr3:44462620-44462831
Length
1865 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCCC
5' ss Score
-0.59
3' ss Seq
CCTTTCTTCCCATTCCCCAGGGA
3' ss Score
10.2
Exon sequences
Seq C1 exon
ATGAGGAGCCCAAGGTCAACCCGAAGCTTTACATGTGTGTGTGTGAGGGCCTCTCCTGCGGGAACGAGGACCACTGTGAGGGCCAGCAGTGTTTTTCCTCCCTGAGCGTCAATGATGGCTTCCGCGTCTACCAGAAGGGCTGCTTTCAGGTCTATGAGCAGGGGAAGATGACGTGTAAGACCCCGCCGTCGCCTGGCCAGGCTGTGGAGTGCTGCCAAGGGGACTGGTGCAACAGGAACGTCACGGCCCGGCTGCCCACTAAAG
Seq A exon
GTTCCCACGGCTCCTTCCTTTTCTAGATCAAGGGGTTTTGTGAGCGTCGCCCCAAGTCTGTGTGGGTTAAGGATCTGCGTAGCCAGAAGCAATTCTTCCTACTCGCTGAACCAGAGCTGACGGGGCCGTGGAAGGTCACTCTGGGTGAGGTAAACAAAGGCATAGCCTTTGGAATCTAAAAGGAGAAGGACATTTTGGGAAAGCGAATGATGGGACATGCATCCGGAAGGTGGGTGTATAGGGGATGGATCTGCTGAGCACGGGTCACCATGAACAGGTGTGTAGGCCATGTGTGTTGCAAGAGAAGTAGGAACACTAGCTCGGTGCTTGTGCGAAGTGCCTTTCCCTTGTTAAGAAGGTGATAAAGGAAAGCTTGCTCAGCCTTCCAAATCAGATCCCTAGCCTTCTGCAACAGAAGGCAGATGTGGTTGTGCATGAGCCCTGAAGTTAGGCGATTTCCCCTCATGCATTTCTTATGGATTCTGAGTCCTTCGGTAGTCGGTCTCTCTCTGCAACTCTTTTCTCATATGGTGAAATCTCATTGGCTATCTCACATGGCTGTCAATATCAATATAGGCCTGCCTCAAGCCAAATTTATTCCTGTTATATATATATATATGTGTGTGTGTATATATATATCTATATCTATATCTATATCTATATCTATATCTATATATATATATATATATATATATATACTACCTCTTACTAAGTTTAATTATATGATTTTTGTACTCATGGAAGAAGGAAAGCACAAACGGGGTAAGAGAGGACACTCAGAGCCTTCACTGCAAGGACTGTCACAAGGCAGGAAACCAAAGAGCCAATAGGTCACGTGGCAGTTTTGATCACTTTAGGGCAGATAGAACAGGCTACATCGGGATATAAAAACTAAGTTGAACACAAGGGTTTGAAAAAGAAGGATTGAATCTTTAAGTAACTAACTCAAGGGTTATTTCCTTAAGCTCAGTGTTTTAATTCTTTACTAACATAATGGAAGTCAGGAAGATGTGTCTGTATTCACACAAAGTCCTCGTCAGCGTGAAGATCTGCACGAACACATTATGCTACACATTAAGCTTCACACGTTTACTTATGGATTTACTTATTTATGTTTTCGTGTGTGTGCAAGCCCTGCATTTGCCCATGTGTGCTGAGCGTGTCAGAGGACACCTTGTGGGAATTGGTTCTCTTATTGTGTGGGTTCCAGGGATCAAACTCAGGCTGTCAGGCTTCGCCGCAACTCCTCTGACCCCTGAGCCGTTTCACTCTCCCCACACCCTGTGCTTTCATAGAAGGCATTCCCTGGAAGGAATGTCCCATTTGAGAGGCCACGATATCTGTCATATATTAAATTGCTTTTATACATATTCATGCATGTGACATGCGCTATAGAGTCCTAGCCTGATTCTCAGGACTTGGGAGGAAACAATATAAAGGACCCTTAAGTCGAGAGCGGATCGCTGCAGGGAACACTGAGGCAGGCAAAGCTTAGGGAAGACATCAGCACTTTCTCACTGGAATATTACGGTATCATAGCGTCCGTCAGGGCTTGTTGTATTTGCAATCCACGTTACTAAGAGTTAACATCAAGGATTATATATTTAAGAAGCTCTTAAGCAGTCATGCATCAATACAGTGGATTCTTGGTGGAATCCTTCCTAAACCCCAGTTCTGGTTAATTGATTGATCACTTAAATGAGCGTCTGAGCCCTTGGCTAAATATTAGGAAGTATTTTAGCTGTAAGTTGCTTTGATACGTGAGATTGTTTGGTCAGGATCAGGAGTCGTTTCTTAGGATATTGGTAAATTACAGGAAAACTGTGGTTCCCGTGGCCACTTACCCCTTTCTTCCCATTCCCCAG
Seq C2 exon
GGAAATCCTTCCCTGGATCGCAGAACTTCCACCTGGAAGTTGGCCTTATCATCCTCTCCGTGGTGTTTGCGGTATGCCTTTTCGCTTGCATCCTTGGCGTTGCTCTCAGGAAGTTTAAAAGGCGCAATCAAGAGCGCCTGAACCCCAGAGACGTGGAGTATGGTACTATCGAAGGGCTCATCACCACCAACGTCGGAGATAGCACTCTAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005033:ENSRNOT00000006963:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=84.3)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(10.3=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTCAACCCGAAGCTTT
R:
CAAGGATGCAAGCGAAAAGGC
Band lengths:
351-2216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]