GgaINT1005389 @ galGal4
Intron Retention
Gene
ENSGALG00000012551 | ACVR1
Description
Activin receptor type-1 [Source:UniProtKB/Swiss-Prot;Acc:Q90ZK6]
Coordinates
chr7:35774447-35775121:-
Coord C1 exon
chr7:35774867-35775121
Coord A exon
chr7:35774665-35774866
Coord C2 exon
chr7:35774447-35774664
Length
202 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCTTTCTCTCCTGTTCAAGGGC
3' ss Score
8.98
Exon sequences
Seq C1 exon
ATGAGGAGCTGAAGCTAAATGAATGTGTGTGTGAAGGCATGTCATGTGGGAATGGAGACCGCTGCCAGGGCCAGCAGTGCTTCGCCTCCCTGAGCATTAACGATGGTGCTAAGGTTTACCAGAAAGGCTGCTTCCAAGTCTATGAACAAGGGAAAATGACGTGCAAAACTCCGCCATCTCCTGACCAAGCTGTGGAGTGCTGCCAAGGATACCTTTGCAACATGAATATCACTGCGAAGTTGCCCTCTTCTAAAG
Seq A exon
GTGAGTGGTTAATTTATAAGTAAGGAATTCTGAGCAGTTGAGTCATGGTAGCATGCTTTGAGCAGGTGTGTGCTGCAGCCTTGACTGTGTAAAGGCCCCTCCCAGTCTGAGTGGCCACTGAGCAAAGTGTGTCAGCACTGCTGGAAGTGTTTTCTCAGGGTGTTCTCATGTTTTTTCTTTTGTTCTTTCTCTCCTGTTCAAG
Seq C2 exon
GGCAAACCCTGCAAGGGGAAGCTGCAGGTTACAGCATGGAAACACTAATCATCGTTATACTGGCTCCTGTAGTAGTGCTGGTAATTTTCTCTGTGGTAGCTGTGCTCATCATCCGGAGGATACAGAAGAACCACATGGAGAGACTCAATTCTAGAGATGCAGAATATGGCACAATTGAGGGACTCATTGCTTCAAATGTTGGAGACAGTACATTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012551:ENSGALT00000020497:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=87.2),PF151021=TMEM154=PU(40.4=46.5)
A:
NA
C2:
PF151021=TMEM154=PD(58.6=79.5),PF085157=TGF_beta_GS=PU(10.3=4.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGGCATGTCATGTGGG
R:
CCAGCACTACTACAGGAGCCA
Band lengths:
307-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]