MmuINT0010587 @ mm9
Intron Retention
Gene
ENSMUSG00000026836 | Acvr1
Description
activin A receptor, type 1 [Source:MGI Symbol;Acc:MGI:87911]
Coordinates
chr2:58330016-58332339:-
Coord C1 exon
chr2:58332076-58332339
Coord A exon
chr2:58330228-58332075
Coord C2 exon
chr2:58330016-58330227
Length
1848 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCCC
5' ss Score
-0.59
3' ss Seq
CTTTTCTTCCCATTCTCCAGGGA
3' ss Score
9.98
Exon sequences
Seq C1 exon
ATGAGAAGCCCAAGGTCAACCAGAAACTTTACATGTGTGTGTGTGAGGGCCTCTCCTGCGGGAACGAGGACCACTGTGAAGGCCAGCAGTGTTTTTCTTCTCTGAGCATCAACGATGGCTTCCACGTCTACCAGAAGGGCTGCTTTCAGGTTTATGAGCAGGGGAAGATGACGTGTAAGACCCCGCCGTCACCTGGCCAGGCTGTGGAGTGCTGCCAAGGGGACTGGTGTAACAGGAACATCACGGCCCAGCTGCCCACTAAAG
Seq A exon
GTTCCCATGGCTCCTTCTATTACTAGATCAAGGGGTTTTGTGAGGGTTGCCCCAAGTCTGTGTGGGTTAAGGATCTGCGTAGCCAGAAGCATTCTTCCGACTTGCTGAGCCAGAGCTGCTGGGCCATGGAAGGTCACTCTGGGTGAGGAAGACAAAGGCATGGCCTTTGGGATTGAAAAGGAGAGTGATGTTTTGGGGAAAGTGAGTGATGTGACATGCATCCAGAGGAAGGGTGAAGGGGACGGATTCGCTGACTGCAGGTCATCACAAATGGGTGTATGGGGCATGTGTGTTTCGAGAGAAGTAGGAACACTAGCTTGGTGTCTGTGTGAAGTGCCTTTCCCTTGTTAAGAAGAAGATGAAGGAAGCCTTGCCCACCCTTCCAAATCAGATCCCTAGCCTTCTGAAACAGAAGTCAGATGAGGGTGTGTATGAGCCCTGAAGTTATGCCATTTCCCCTCATGTATTTCTTATGGATTCTGAACCCTTTGGAAGTCGGTCTTCCTCTGAAACTCTTTTTCTCATATGGTGAACTCTCATTGTCTTATCTCACATTACTGTCAATATTAATATAGGCTCACCCCAAGCCAAATTTATTCTTGTAATGTACAGTACCTCTTAATAGGTTTAATTATATGATTTTGTCCTTGTGGAAGAGGGAAAGCACAAATAGGATAAGAGAGGACACACACAGCCTTCATTGCTAGGACTGTCACAAGGCAGGAAGGAGGCAAGAGGCTGGAAACCAAAAGACCAATAGGTCACATGGCAGTTTTGAAGTTACTATGACCCCCTTTGGGTAGATAGAACAGGCTACATTGGGATATAAAAATAGGATCAAACACAAGGGTTTGAAAAAGGATTGGCTATTTGAGTAATTAACTCACAGGTCATTTCCTTATGCTCACTGAGTTAATCCTTTGCTAAAAGAAGGGATGGACAGGAAGAAACATCTGTATTCACACAAAAACCTTGCCAGCAGTGTGAAGATCCTCACGAACACATTATGCTGCACACTACGCAACACCTTTACTTATGTGTTGACTTGGTTGTGTTTGTGTGTGCGAAAGCGCAGGCACACATGGCCCTGCATTTGCACATGTGTGTTGAGCATGTCAGAGGACAACTTGTAGGAATTGGTTCTCTTATTGTGTGGGTTCCAGGGATCAAACTCAGGCTGTCAGGCTTTGCAGCAACTCCTGAGACCCTCTGAGCCCTTTCACTCTCCCAACACCCAGTGTTTTCACAGAAGACATTTCCTGGAAGGAATGTCCTATTTGAGAGGCCACAATATCTGTCACTTATTAAATCACTTTTACGAATAATTATACAGATGGTATGCACTATAGAGCACCGGCCTGATTCTCAGGACTTGGGGAGTTAAAGAAACAATATAAAGGAACCTTTAAGTAGAGAGTGGATGGCTGCAGGGAACTCTGAGACAGGTCAAGCTTAGGGAGGAGATCAGCGCTTTCTCACTGGGATATTACAGTATAGAGGCTGTTCATCAGGGCTCGTTGAAAAGCATCTTTGCATCTGAAGTCCACGTTCATAAGCGTTAACATCAAGGATTATGTGTCTCTTATATTTAAGAAGCTCTTAAGCATTCATGCATTAAAATACAGTTGATTCTTGGTGGAATCCTTTCTAAACCCCAGTTCTATTTAATTGATCACTTAAATGAGTGTCTGGGCCATTGTCTAAATGTTAGGAAGTATTTTAGTTGTGAATTGTTTTGATACGTGAGATGGTTTGGTCGGGATCAGGAGCCATTACCTAAGATATTGGTAAATAACAAAGAAAACTGTGGTCTCCACGCCTACTTACTCTTTTCTTCCCATTCTCCAG
Seq C2 exon
GGAAGTCCTTCCCCGGAACACAGAATTTCCACCTGGAAGTTGGCCTTATCATCCTCTCGGTGGTGTTTGCAGTATGTCTTTTAGCTTGCATCCTTGGAGTTGCTCTCAGGAAGTTTAAGAGACGCAATCAAGAGCGCCTGAACCCCAGAGACGTGGAGTATGGTACCATTGAAGGGCTCATCACCACCAATGTGGGAGACAGCACTCTAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026836-Acvr1:NM_007394:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=84.3)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(10.3=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGGCCAGCAGTGTTTT
R:
CATACTCCACGTCTCTGGGGT
Band lengths:
352-2200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: