BtaINT0013475 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013555 | ACVR1B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSQ2]
Coordinates
chr5:28042980-28044253:-
Coord C1 exon
chr5:28044097-28044253
Coord A exon
chr5:28043105-28044096
Coord C2 exon
chr5:28042980-28043104
Length
992 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
CATTTCCTTTGCTGTTGCAGATA
3' ss Score
10.36
Exon sequences
Seq C1 exon
GGAAACCTGGAATTGCTCATCGAGACTTAAAGTCAAAGAACATCCTGGTGAAGAAAAATGGCATGTGCGCCATCGCAGACCTGGGTTTGGCTGTCCGTCACGATGCGGTCACAGACACCATTGACATTGCCCCTAACCAGAGGGTGGGAACTAAACG
Seq A exon
GTAGGAAGGCCCAGGGCCTGTGCCCTTGCCCGACACTTGTACTGAGTAGCCCATGTGTGCCCTTGTCCGTGTGCGCGGGAGGAGTGTGGTCTCAGACAGCTGGTGGTTGCACTGAAGTCCTGCCCCCACACTGGAGAGCCACATGGTTGCATGGAGCAGATCCAAGTGCCAGCAGCATACCTCCATAGCCCCGTATGCCCACAGGCACAGGCGCATTGGGCAGGTGAGGCAGCAGAGAAAGGGAGCTTGGAGCAAGGTTTGGAAGGGGAACGGGCGCCAGGCTTGGCTAGCGGGAAGGGAGAGTGCAGTCTGAAGGGGTGGCCTGTGCAGGACCCCGGAGGAGGCAGAGCGCATGTTTTGCTTGGGGTGTAGAGAGCAGTTTCACCTAGCAAGAGCAGAGGTGCTCCAGTGTAGAAAGTAAGGGGCCCCCTTCAGGACTGTGGGGCCTCCCTCCTGCTTCATGGAAAAGGAAAGTAAGAAATAAGGGACCAGGACTTCCCTGGTGGTCCCGGGCTAAGACTCCACGTTCCATGCAGGGGGCCCAGGTTTGATCCCTGGTCGGGGAGCTAGATCCCACATGCTGCAACTAAGAGCGCGTGCCACACAAAGATCAGAGATCCTGTGCACCTCAGCAAGACCCGGCATAGCCTAATAAGTAACTAAATACTTAGGAAAAGAACTAAGGGACAGGGACTCCCCTACTGGTCCAGTGATTAGGAATCTGCCCTTCATTGCAGGTGGCACAGGTTTGATCGCTGATCGGGGAACTAAGACCCCACATGCTGTGTGGCTTGGCAAAAAATTTAAAAAAAGAAATGAATGAATGCAAAACATGGGAGTTCGCAGTGAGAAGAATCCGTCACTTCCTCCCCCCGAAGGGGCAGTCTTTGGTGACGGCTTTCCCACATTCAGGGGGCCCTTGAACCAGTGCTTTGAGTCAGGAGAGAAGTCATTGTTTTCCACCCATGACCACATTTCCTTTGCTGTTGCAG
Seq C2 exon
ATACATGGCCCCCGAAGTGCTCGATGAAACCATCAACATGAAGCACTTCGACTCCTTTAAATGTGCTGATATCTATGCCCTCGGTCTTGTGTACTGGGAGATTGCTCGAAGATGCAACTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013555:ENSBTAT00000046665:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACCTGGAATTGCTCATCG
R:
CCAGAGTTGCATCTTCGAGCA
Band lengths:
280-1272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]