GgaINT1005396 @ galGal4
Intron Retention
Gene
ENSGALG00000014631 | ACVR1B
Description
activin A receptor, type IB [Source:HGNC Symbol;Acc:HGNC:172]
Coordinates
chrLGE22C19W28_E50C23:1366-2081:-
Coord C1 exon
chrLGE22C19W28_E50C23:1925-2081
Coord A exon
chrLGE22C19W28_E50C23:1491-1924
Coord C2 exon
chrLGE22C19W28_E50C23:1366-1490
Length
434 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGG
5' ss Score
8.47
3' ss Seq
GCTCCTTCTCTGTTGTGCAGATA
3' ss Score
8.36
Exon sequences
Seq C1 exon
GAAAGCCTGGGATTGCTCACAGAGACCTGAAATCCAAGAACATCTTGGTGAAGAAGAATGGCACGTGTGCCATTGCTGACCTGGGGCTCGCTGTGCGCCACGACTCCGTCACGGACACCATTGACATCGCCCCGAACCAAAGGGTTGGAACCAAACG
Seq A exon
GTATGGGAGCACCGGGGGGGGTTTTGTGTCCTAAACCTTCCTGCAGTGTCAGCTCCGTGCCCTCTGCCTTCCCTTCTCACTCGGGTCCTGCTGAGCTGGGAGGCGTAGGCCAGAACCACAGGGCTTATATAAGGCTTGGCAACGAGCTTGGCCTTCTTGCACGCCGTCTGGGGGCTGCTGCCTGGAGCTGCTGTGCTTTGGGCTGGTTTTGCCTTTCCCAGCGTGCTGCTCTCCTGGAGCTGCTGTGCTTTGGGCTGGTTTTGCCTTTCCCAACGTGCTGCTCTCCTGGAGCTGCTCTGTTTGCTCCTCTGGGCCCCGTTCTGTGCTGATGAAGGCTGCACCGTTCCATTCCATCCGCTGGGTGCTGGGTAAACCCCATTTCCCATCCTCCATTCCTCCCAGGATTAACACCCTGCTCCTTCTCTGTTGTGCAG
Seq C2 exon
ATACATGGCTCCCGAGGTCCTGGATGAAACCATCAACATGAAGCACTTTGATTCATTTAAGTGTGCTGATATCTACGCCCTGGGTTTGGTCTACTGGGAGATCGCTCGCAGGTGCAACGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014631:ENSGALT00000020492:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCTGGGATTGCTCACA
R:
CTCCTGCGTTGCACCTGC
Band lengths:
282-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]