RnoINT0012770 @ rn6
Intron Retention
Gene
ENSRNOG00000006934 | Acvr1b
Description
activin A receptor type 1B [Source:RGD Symbol;Acc:735207]
Coordinates
chr7:142848566-142849976:+
Coord C1 exon
chr7:142848566-142848722
Coord A exon
chr7:142848723-142849851
Coord C2 exon
chr7:142849852-142849976
Length
1129 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
AACTCTTTCTTCCATTCCAGATA
3' ss Score
10.69
Exon sequences
Seq C1 exon
GGAAGCCTGGAATTGCTCATCGAGACTTGAAGTCAAAGAACATTCTGGTGAAGAAGAATGGCATGTGTGCCATTGCAGACCTGGGCCTAGCTGTCCGTCACGATGCTGTCACTGACACCATAGACATTGCTCCAAATCAGAGGGTGGGAACCAAACG
Seq A exon
GTAAGTCCTCGGCCCCAGCCCTCGCCTGCCACCTTGCCTGAATGTCCCATGCATACATCATATACACACACAGGAGGAGATAGCTCCTGGTCCTCGGATGGCAAATGTTGTTCTGTCCCTCACACTGGAACACTTCCCAGCCATATCTAGCAAGCACCTGGGCCAAGAGCATAGCTCCGTACAAGTATGGCCTTGGAGGAAGGCAGTGAAGAAAGAATTTGGAGTAGAAGACCTGGCTTGGTAGCACACACCTTTAGTCCCAGCACTCAGGAGGCAGAGGTAGGCAGATCTCCGTGAGTTTAAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGACAGCCCAGTCTACATAGCAAAACTCTTGTTCAAAAAAGGAAATAGATTTTGAAGCAGGGTTGGGAAGGGTAGATCCCAGACTCTGGAGGAGGCCAGGGAAATGCTGCAGGATGGTGGGTGTGAGGAGTGAGCTCAGAGAGTGAGGCAGAGCTAATATTGGCTGGGACTGGAATACCTGGAAGGGGTGTGGCCTGGAAGGGGTGTGGCCTGCTCTCCACTTCCTTTGAGAAGAGAAGAAAATGTATAGCTGACATCATGGGATGGAGGTGGGTGTAAGAGGGGGTCTATGTGAGCTAATTATGCTGCTGTTTTTGTCCTTCTGACCTGAGATTCATCTACCCAGGCTCCAGAGTGTAGGTGGGCATCTTACATCATAGAATTACACAGGGTCACTGCTCAGTCACTAAGTGTGACTTCAATCACTTCGAGATTTATTTTCACTTGTCTGAAGTCAGCTTAAGATTACAAAAGAAATTGAGTATGAAATTTAAGCTCTCCTCATCACTGTGTCCCCCTCAGTAAAGCGAAGGTTCCAGCAGTATCCCACTGTTGCCATCTGTGTGGCCCCACCACGGCAGCCTGTGCTGAGGAATCCAGACGGGCTCCAGAAAGAGTCGTCAGCGCTGAGCTGCCGTGTAGATTTGAATCCAGAAAGGCTGTGCAGTAGGAGATAAGGCTTCTGCTCCCCAAAGAGCTGCATTGGAACAGCCGTCTCACACACCCAGACCTCAGCACCAATTCTCTGATAAAGAGAACCGTCCTCATGTTCTGCATAACTCTTTCTTCCATTCCAG
Seq C2 exon
ATACATGGCTCCTGAAGTACTTGACGAGACCATCAACATGAAGCACTTTGACTCCTTCAAGTGTGCCGATATCTACGCCCTCGGGCTTGTCTATTGGGAGATTGCTCGGAGGTGCAATTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006934:ENSRNOT00000009345:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGGAATTGCTCATCGAG
R:
CTCCAGAATTGCACCTCCGAG
Band lengths:
279-1408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]