MmuINT0010597 @ mm9
Intron Retention
Gene
ENSMUSG00000000532 | Acvr1b
Description
activin A receptor, type 1B [Source:MGI Symbol;Acc:MGI:1338944]
Coordinates
chr15:101033369-101035008:+
Coord C1 exon
chr15:101033369-101033525
Coord A exon
chr15:101033526-101034883
Coord C2 exon
chr15:101034884-101035008
Length
1358 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
GACTCTCTCTTCCCTTGCAGATA
3' ss Score
13.21
Exon sequences
Seq C1 exon
GGAAGCCGGGAATTGCTCATCGAGACTTGAAGTCAAAGAACATCCTGGTGAAAAAAAATGGCATGTGTGCCATTGCAGACCTGGGCCTGGCTGTCCGTCATGATGCGGTCACTGACACCATAGACATTGCTCCAAATCAGAGGGTGGGGACCAAACG
Seq A exon
GTAAGAAGTCCCTCGGCCCCAGCCCTCGCCTGCCACCTTGCCTGGATGTCCCATGCGTGGGTCATGAGTGCACACAGGAGGAAATGGATTAGCACGGAGGAGCATCTCCTTGTCCTTGATGGCCAGTGTTTTTCTGTTCCCCATACTGGGACACTTGACAGCAGTGTCCACCAAGCCCTGGTTCCATAGAAGTGTGGCCCTGGAGGCAGGCAGTGAAGAAAGAATTCAGAGTAGAAGACCTGGCTTGAGCCGGGCGTGGTGGTGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGCTACATAGAAAAGCCTTGTCTTGGAAAACCAAAATAATAATAATAACCACCACCACCATCACCGCCATCATATAAAGAAGCTAGTTGTGGCAGCACACACAACTTTAGTTTCAGTACTCAGGAGGCAGAAAATGGCGGAACTGAGTTTGAGACTAGCCTGGCCTACAGAGCAAGTTCTAGAACAGCCAAGGCTACATAGAGAAACTCTTGCTCAAAAAATGAAAAAGATTTGGAAGGAGGGTTGGGAAGGGTGGTGTCTGGGGAAATGCTGCAGTATAGAGGGAAGCTTGCAGAGTGAGCCCTCTTGAAGCAGACAGAGTGTATTCTGTTGGAGTTTACAGACTAGGTTTGCCATCCTAGAGCAGAGCTAATCTAGGCTGAAACTGGGGCACCTGGGAGGGTGTGGCCTAGGAGGGCGTGGCCTGCTCTCCACACCACTGAGAAGTGAAGGAACTATATAGCTGACATGATAGGATGGAGGAAAGTGGAGGAGAGGGTCTGTGAGCTGGACGTACGTGAACTGATTAGGCTGCTGCATTTTGTCCTTTTGACCTGAGAGTGCATCTACCCAGGCTCCAGAGTGTGGGCGGGGCATCTTACATCACATAATTACACACAATTACTGCTCAGTCACTACGTGTGATTTCAGTCACCTCTAGAGTTATTTTCACCTGTCTGAAGTCAAGTTAAGATTACAAAAGAAATTGAATGAAATTAAGCTCATCTCATCACTGTGTCCCCCTCAGTAAAGCGAAGGCTCCAGCAGCGTCCCACTGCCACCGTCTGTGTGGTCCCATAACAGCCTGTACCAGTAAGGAGTCGTCAGTGCTGAACCATGTAGACTTGAATCCAGAAAGGCCATGCAGTAGAAGACAGGCTTGCTTCTGCTCCCCAGAGAGCTGCATTGGAGCAGCCGTCTCGCACACCCAGACCTTGGCCCCAGCGCTCCGATGAGAGCCGTCCTCGTGTTGTCTGAATGACTCTCTCTTCCCTTGCAG
Seq C2 exon
ATACATGGCTCCTGAAGTCCTTGACGAGACAATCAACATGAAGCACTTTGACTCCTTCAAATGTGCCGACATCTATGCCCTCGGGCTTGTCTACTGGGAGATTGCACGAAGATGCAATTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000532-Acvr1b:NM_007395:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCCGGGAATTGCTCATC
R:
TCCAGAATTGCATCTTCGTGCA
Band lengths:
281-1639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: