BtaINT0013495 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018114 | ACVR2A
Description
Bos taurus activin A receptor, type IIA (ACVR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174227]
Coordinates
chr2:48385203-48389938:-
Coord C1 exon
chr2:48389800-48389938
Coord A exon
chr2:48385334-48389799
Coord C2 exon
chr2:48385203-48385333
Length
4466 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
CCCCCTTTTTTACATTTCAGGAC
3' ss Score
11.53
Exon sequences
Seq C1 exon
GTGGGTACCCGAAGGTATATGGCTCCAGAGGTGTTAGAGGGTGCTATCAACTTCCAAAGGGATGCATTTTTGAGGATAGATATGTACGCCATGGGATTAGTCCTGTGGGAACTGGCTTCTCGCTGTACTGCTGCAGATG
Seq A exon
GTAAGGGAACAAATATTTTTTAAAAAGATATTATGTATGTGTATGTGTGTACCTACTACACATGTATGAAAAGGGTTGAGTACTCTCTAAGGTAATATTATAAAGTACAGCTGTTTTTTAAGTAGACTCCCAGAAGTGGTAGCGTAAAGAAAATTCAGGAGGCAGGGGACAGGAGGGCAGGAAAGGAAAGGTGCTGAAATGTCCTGATTCATTATGGTTGCCAGATGCTTTGCTGGGCACTTCACATACCTTTAGCTTATTTCCTGAAACAACTTTGGAGGTAATTATTAGCTTAGTTTTCTATGTGAGGAATTTGACACTCAAATTTTAAGTAGAAATTAAGTAGCTTGTCTATTTTAGCTTCAAGTTGATGAGTGATAGGGCCTAGATTTGAAACTCTGATCCAGATTCAGGGAGAGGGCTGCTACCTTGGTCAGGTCATATGGGTCCTAAGACACCTAAGGGTTAAAGTCAGCTCTTGGGTGAGAGTTGCATGTAGATTTGGCCTCTCAGACATTGTCCTGGGAAGGTATATGATGGAAACATATACCTCAGCAACAGATTGAATTAGCATTCTATCCTCCATGGCTGAGCACATTATACTGCAGGTTAGATTCTGCCTCTTCAAAGCTTTGAAAGTCTGATCTACTGTAGACATTATTATAAACATAAGTTACATTCTCTAGCACATCACCTTGGTTCCAAGAGATTCCTAGTCCTTGTTTTTTAAATCCTTTTCAAAAATAGGTATTCACATTGATTGATTATAAACCTGCATGTTATATTCCTGGTGTGAAGGAATTATAGTGTTGTGGGTACTGTCTTTAGTGCTCCTTAGAAGGTCTCTCTTTTCTCCAATTATGTTACACTTTTTGGGATATCAGAATATAAGATAAACTTTCTGACTGCTAACCCCCAAACCAATGTTAGTTTGATGTTTTGTTTTTTTCTAATTTTAATTTTTTAAAGGTGTAACTATCTTAACCTATGTTCTAAGAGTATTTTTTGAGTACTGTAATAGTTTTTCAGTGTATGACAGACTACCTCTGGTATATGAAATTTGACTTGGGAAAAGGTGTTTTTAAAGGGAATTTAGTGGACAGTGGTCAGGAATGGACAGCCATTCATTCTTCCAAAATTGGTGTGGGAGTGGACCCAGAACCTGAGTAAACTGCTCAGTGTGTTTTGGGTCAAAGTGGAAGATGAACGCATTTATTATGTGCATTTATGGAGGCAGAAAGAAACAGGTGAGATGGCAGATGTTACGGGAAAATACATTGCTTAAAATTTGACTAATAACTCTGAAGCAAATCAACTGGATATAGTATTATGAGGGATAAACAATGTACAGTTCAGTTGATAAAAATGTATCTTGGACAGTTAATTCTAGAGTAAGGTTAAGTATGAATTGTCCATGTAGGTATGTGTTTTCTGAGTTTATGTGCTCAGTCATGTCCAACTGTTTGCAACCACATGGACTGTAGCCCATCAGGCTCATCTGTCTATGGGATTTTCCAGGCAAGAATACTGGAGTGGGATTCCCACTTCCTTCTCCAGGATATCTTTCCAACCCAAGGGTCGAACTCATGTCTCCTGTGTCTCCTTCATGGCAGGTGGATTCTTTACCTGCTGAGCCATGGATAAATGTTAATACCTGAGAAGTGTAAGGAAATATTACCAGAGTTTGGAGGAGTGAAGAGTTGCTTTGTTTTGTATGAGGGAAGTTTTTATGGAATAAGAGAGGGATAGATGCTTAGATTTCTTAAATACCTTGCATGTGCTATGGAATACTTAGTTGCAAAGAGGCATTTCTGATCCAAGTCAGAAATTATAGGGGACAGTGTGAACATTGCTGTAGTGATTTTAATTTTTTTTGATGGCTAGTCATTGATGGTTTAGTTCAGTGAGTCTCAAATTTCAATGTGCAAACCAAACTCCTGGGAATCTTAAAATTCAGATTTTGACTCAGTAGGTCTAGGGTGGGGCCTAATAATTACATTTCTTATAAGCTGCCTGTCAATGCTGCTCACCTGTGGACCACATTTTGAGTAGTGAGGGGAAGAGACACTTTAGAATGTCAGTACTCTTAGGTGCACAAGCAGAGCCCGACTATTCAGCTATCAGGTATTTGTACAGTTAGACAGGGTTGAATTAGATAGCCTCCTTCATGATCCAGTTAACTTAATTCTATGAAGGAGTATTTGGTATGTTTTGAGAACTTGCACAGGGTTTGTTATCTATATACAGACACATCTGGTCACTGAAGTTGCTCATTAGTGACCAGTTTCCCATCAAGGACAGATGGTTCATAGACTCTAGAGTCATTCTCAGGTGGATTCAGCTTACGTCATAGCTGTATGCCTTTGTGCAAATTATGGAACTTTTTTTGAGCTTATCTGTAAAATACGGTAATGCCACCTGTACTCTGTGAAGATAAAATGGAATATAAAGTTTCTGGTCAGCATTAAGTGTTTATTGATGATTAGCTATTACTAACTCCTAACTGAATTTCTGTATTTGAGTAGGCCTAAGTAAAAAAAAAATTATGTTGTAGAATAAATCTTGCTTTTCTGTGAAGGCACCATTCTGACTTGTTGGGAACCCTCTTTATACAGTACATTTGTGATTTTTAAACTAAATATTTGGCAGCTTTTGTGAGGGCAGAGATGTGCCTCTGGAGTACATACCTCCTTGTATGATTGTGTAGGGGGCTAGGGCATGTCAGAATAAAGATGGCTGTAATGGACTGAACCGAAAGGAAAGCACTAGTGTTGATAGTCTGATCTGAATTGCAGGAGGAGTGGGTACCTTACAGAGATGTTATATCCTTAATATGCACATATCCACAGTTCCCTGTGTCCTATATACAGAGGTAGGTATTCCTTATGCAGTAGGTAAGAGAGCTCCTTAGAATATTTAGCAGTGTTACATGCCAAATTAGACTTTTTGATTTCTTCTAAGTTAAAATTTGTGGTTGTAACTACAGTTGAGTGTTTGTTTCTCTCCTGTCATTATCAGTTCAGTTCAGTCGCTCAGTCGTGTCCAACTCTTTGTGACCCCATGAATCGCAGCACACCAGGCCTCCCTGTCCATCACCAACTCTCGGAGTTCACACAAACTCATGTGCATCGAGTTTGTGATGCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCTCAGCATCAGGGTCTTTTCCAGTGAGTCAGCTCTTTGCATGAGGTGGCCAAAGTATTGGAGTTTCAGCCTCAGCATTAGTCCTTCCAATGAACATCCAGGACTGGTCTCCTTTAGGATATACTGGTTGGATCTCCTTGCAGTCCATGGGACTCGAAGTCTTCTCCAACACCACAGTTCAAAAGCATCAGTTCTTCTGCACTCAGCTTTCTTCACAGTCCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCCTTGACTAGATGAACCTTTGTTGGCAAATTAATGTCTCTGCTTTTGAATATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAATCACCATCTTCAGTGATTTTGGAGCCCCCAAAAATAAAGTCAGCACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTCACTCTGCTCTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAACGGTGGTGTCATCTGCATATCTGAGGTTATTGAGATTTCTCCTGGCAGTCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGTGTTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATGCAGCCTTGACTTACTCCTTTTCCTATTTGAAACCAGTCTGTTTGTTCCATGTCCAGTTCTGTTGCTTCCTGACCTGCATATAGGTTTCTCAAGAGGCAGGTCAGGTGGTCTGGTATTCCCCTCTCTTTCAGAATTTTCCAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAGTAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTTGATGATCCAGCGGATGTTGGCAATTTGATCTCTGGTTCTTCTACCTTTTCTAAAACCAGCTTGAACATCTGGAAGTTCACGGTTCACATATTGCTGAAGCCTGGCTTAGAGAATTTTGAGCATTACTTTACTAGCATGTGAGATGAGTGCAATTGTGCAGTACATTCTTTGGCATTGCCTTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTCATTATAGCATATGACAGTTAGGAAAAGGTGGTGAAAGTATGCTTTAGAAAACTTGTTCCAGTTAGGAAAGCAAGATGATTTGAATTAAAATGACTTTTCCCCCTTTTTTACATTTCAG
Seq C2 exon
GACCTGTAGATGAATACATGCTGCCATTTGAGGAAGAAATTGGCCAGCATCCCTCTCTTGAAGACATGCAGGAAGTTGTTGTGCATAAAAAAAAGAGGCCTGTTTTAAGAGATTATTGGCAGAAACATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018114:ENSBTAT00000024108:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]