RnoINT0012790 @ rn6
Intron Retention
Gene
ENSRNOG00000005334 | Acvr2a
Description
activin A receptor type 2A [Source:RGD Symbol;Acc:70911]
Coordinates
chr3:33028397-33030774:+
Coord C1 exon
chr3:33028397-33028535
Coord A exon
chr3:33028536-33030643
Coord C2 exon
chr3:33030644-33030774
Length
2108 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TCTCTTTTTTTACGTTTCAGGAC
3' ss Score
11.37
Exon sequences
Seq C1 exon
GTTGGTACCCGGAGGTATATGGCTCCAGAGGTGTTAGAGGGTGCTATAAACTTCCAAAGGGACGCATTTCTGAGGATAGATATGTACGCCATGGGATTAGTCCTGTGGGAACTGGCTTCTCGTTGTACTGCTGCAGATG
Seq A exon
GTAAGGGAAAAAACTCTTTTTTTGAAAAGTATATATGCCACATTTATGAAAAGTGGTTATACAAAAAGGCAAATAACTATATTTTCTTTTATGAACTCCACAAGGTGGCAGAAGGTGAGACAGCAGGGTGAACTTGGAGGGGCTGGGTATGGAAGGACCTGGCATGGACACTTTGGGGATAGAAGTAGGTTAGCTAGGACATATGACGAGAAAATGCATTGCTTAAGAACTTCAGTGTAAGTCCTTCTTATCAAACTATGACATAGTGTGGTGGGGACATAGGCCCTGTTGTTAAGTAAATAGTTAAGGTGATAATATACCTTCTGGAGAATGAACTCTAGAATGAGGTTAAGTGTGAACCATTTGTCCTGGACCTGCTATATGAGGCATTCAGGTAACTATAATGAGGTGCTCTCCCAGCTGAGAAATGTAGGGTGTAGTATAGGGATTAAGAAGAGTCACTTTGTGGGGAAAGGAGTTACAGGGGATTTGTTGAGCAAGAGATAAGGTTAGATGCTAATTTTTCTTAAATGCCTTGTATGTGCTGTAAAATACTTAAGAGCAGGCTATGTCACAAGGCAGAAATCAGGGCCAAAGGGAAAGTGAACCATATATTGATAAGGTGAGTGCATTTAAGTTTGTGTCTAGTTGTTAGTTAAAGTTGAGCAATTCAAACCTTACCTATTCCTAGGAATCTTGTTAAAATAAGCCTGTGGAGGCTGGGGAAATAGGTTGGTTGTTAGGAACATTGGTTGCTCTTCCTTCATCGGCACCAGTCATGGCTGTGGTGCAGATATGCAGGCCAAACAGTCATACACCTTTAAAGAACATCAGCATCTGAGCTGAGTGGTCTGTATTTTACAAGCTACCATCGATTGATGTCATTGATCTATGAACCTAACAAAGATTGAAATTCTAGCATGTTAGTACTAATACAGTGGGCATACTAAATAGTTCTTCCGCTATCCAAAGGTTCACAGGGCTAGTGAAATGGCTCAATGGACAATTCCCATGACCTAACTTTAGTCCTGGGTCTCATATAGTGGAAACTTCCTTGCAAGTTGTCCTCCAATCTCTATATTGAATATTGTGGCACACACGTACAGGTACACACACAGTAAGTGTAGCAATCATAACAGATGGTTCCTGAAACACTGGTCCAGGGCAGAGTTAGTGCCTCCTTTAGTTTATGATTCTGTTTGAAGTGTTAGTGTATCTTTATACTTTTCACAAAGCTTATCTGTGCACGTCTATTTCTCTCTGGTCAATGCACAGTAGTGACGTGTTTGAGTCACGGGGAGAAAAGCACAGACTTCAGATAAGATTTAGATTTCAACTCTACTTTGTAATAGATACCTCTGCAAAATCTCATAACTTTCTGAGCTATCTTATTTGCAAAATAGAGCCAATTCCAACCTTATTGGGAAATAAAATAATGCACATTCATGTCAGATATCTAAGAAAAAACAAGTTATGTCCCTGAAAAAAATTTTGTTATGTGTAACGTTTTGACTTGATGGAAATTCTGGTTTAAGCACCTTAGTTTCTTGAATATAAAAATAAATATTATTTATAAGTATCATAAATATGCTTGTGAGAGATCAGAAAACCGGAAAGTGCATCAGTTACACAAGTGGTCATGTAGGGTGTTTGAGCATGCCACAGATAGGTAGGGCACTAAGTTTTCAGAGGTGTTAACATTCTCACAATGTTAATATTCTGATATGAATTGTTGAAATGAAGAGGGATTCCCAGCTTTGATTTCTAAAGACAAACAGCTTTTTGTCATGTATAGACATGGGCATTTAGCATTTGTCTCCTAAAACAGCCTGCTAAGACTGAATATGAAGATCAAGAGTTCAAAGCCAGCCAAACTATTTAGTCTGACCCTGTCTTCAACAAGCAGCCATCAGAAGTCATAAAAACAGACCTTTTAGTTTCTATTAGCTAGATTCTGGTCCCACTTTGATCCAAGTAAACTAGGAGTCCATTTCTCTCCTTTTCACTTTCTAATATAGAATAGGAAAAAGCAGGATATAGAATGTATTTTAAAGAGCTTGTACTAGTCAGGAGGCATTGCAATGGATTTCTCTTTTTTTACGTTTCAG
Seq C2 exon
GACCTGTAGATGAGTACATGTTGCCATTTGAGGAGGAAATTGGCCAGCATCCATCTCTTGAAGATATGCAGGAAGTTGTTGTGCATAAAAAAAAGAGGCCCGTTTTAAGAGATTATTGGCAGAAACACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005334:ENSRNOT00000007404:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]