BtaINT0013982 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104390080-104390815:+
Coord C1 exon
chr11:104390080-104390209
Coord A exon
chr11:104390210-104390666
Coord C2 exon
chr11:104390667-104390815
Length
457 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TGTCTTTTGCTTCTCCCCAGGGA
3' ss Score
11.82
Exon sequences
Seq C1 exon
GCCTGCGAGAAGACCCAGCTGGAGTTCATGTCTGAGCAGTGTGCGCAGACGGACAGCGAGCCCCTGCGCCTCTCCCCAGGGGGCAGCACCGCCTTCTACCGCTGGGGGACCGCAGAGCAGTACAGCGAAG
Seq A exon
GTGGGCCCAGGTTGGGGGGCCAGGCCCAAGACCCTGGGCGGGGAGCGTCACTAGGGGAGGCCCGGCATCACTCTGATGCTGTTGCGAGCAGGCTCAGGCTCTGTGTCTCACCGAGCATCCCACCCGCCCCGGCTCAGCCCCTTGCCGGCAGGTCAGCCCTGACCTCTCCTCCCTGAGTCTCCATCTCCCGTCTGTCAAACGGAGATAGGAGGCGTAGCGTGATGCTGGAAAAGCACTCGGCTCACAAGTCAGCCCACTCATCACATGGTGATGTGATTACTGCCTCGGGAGGCGGGGCAGGTGGGAAGTAAAACCCGCGCCGACCCCAAATGCAAAGAGCCCAGTGAGATGGCGCTTGGGGGTCAGTGAGAGCCCACTTGGATCCAGCTTCGCAGAGTCTCTGTCCCCGGCTCCCTGCACCCTCCCTCCGGGCTCCTTGTCTTTTGCTTCTCCCCAG
Seq C2 exon
GGAACGCCCTGTGCAGACACGTGTGCCGGGCCGTCGGCGAGAGTTTCATGGTGCGGCGTGGGGACCGTTTCCTGGACGGCACGCGCTGTGTGCCGGGCGACCCTCAGGAGGACGGGGCCCTGAGGCTGTGCGTGTCAGGCAGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093:ENSBTAT00000020085:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGAGAAGACCCAGCT
R:
CCTGCAGCTGCCTGACAC
Band lengths:
278-735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development