HsaINT0003948 @ hg19
Intron Retention
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:1366]
Coordinates
chr9:136301949-136303017:+
Coord C1 exon
chr9:136301949-136302075
Coord A exon
chr9:136302076-136302868
Coord C2 exon
chr9:136302869-136303017
Length
793 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TTTTCACTCTGCCCTCCCAGGGG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GCCTGCGAGAAGACCCAGCTGGAGTTCATGTCGCAACAGTGCGCCAGGACCGACGGCCAGCCGCTGCGCTCCTCCCCTGGCGGCGCCTCCTTCTACCACTGGGGTGCTGCTGTACCACACAGCCAAG
Seq A exon
GTGGGGCCTGCGGAGTGTGGGGTTGGGGGAGGAGCCAGCCCTGGAGACCCTCGGACAGGGCAGAGTCATAGGGGGGTTGGCCTACTATCCCTCCAGCACTGGGCAAAGTGGTTCAGGCTCTGGCATCCCACAGACCATGGATGACATAGTGGCCAGGCCTCGCTGGTAGATCAGGCACTGACATCCCATCTCTGAGTCTCAATTTCCCATCTGTGAAATGGAGATAATAGCAGTAGGTCCCTCCCTGGGCGCTACAAGGATTCAGGGAGATAATCGGAAAATGCCAAGTGTGTTCCTTGGTTCATGATACTTTTTTTGTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGGGGCGTAATCTCAGCTCACTGTAACCTCCGCCTCTGGGATTCAAGGGATTCTTGCCCCTCAGCCTCTCGAATAGCTGGGACTACAGGCTTGCACTACCATGCCGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCTAGGCTGGTTTCAAACTCCTGACGTCAGGTGATCCGCCTGCCTCGGCTTCCCAAAGTTCTGGGATTACAGGCATGAACCATTGCGCCCAGCCTTGGTTCCTAATTCAATACCATTAATTATTAGATTAGATTAGGATCGTGATTAGGATTATTGCCTTAGGAGGTGGGATGTGGGGAAGATAGAAACCCTTGCCCCAGATGCAAAGGATGAAGCTGGGTGGGGGCTGGGGGACTTGCCCCTCCTGCTCGGTTCAGGACACCCTTTTTCACTCTGCCCTCCCAG
Seq C2 exon
GGGATGCTCTGTGCAGACACATGTGCCGGGCCATTGGCGAGAGCTTCATCATGAAGCGTGGAGACAGCTTCCTCGATGGGACCCGGTGTATGCCAAGTGGCCCCCGGGAGGACGGGACCCTGAGCCTGTGTGTGTCGGGCAGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323-ADAMTS13:NM_139027:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.9=2.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGACCCAGCTGGAGTT
R:
CTGCAGCTGCCCGACACA
Band lengths:
270-1063
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)