RnoINT0013300 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5540603-5541938:+
Coord C1 exon
chr3:5540603-5540729
Coord A exon
chr3:5540730-5541789
Coord C2 exon
chr3:5541790-5541938
Length
1060 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTTGCCACTCTGCCTTCCAGGGG
3' ss Score
8.85
Exon sequences
Seq C1 exon
GCTTGTGAGAAGACTCAGCTGGAGTTCATGTCAGAGCAGTGTGCCCAGACAGACAGACATCCACTGCAACTTTCCCAAGGCAGTGCCTCCTTCTACCACTGGGATGCTGCTGTGCAGTATAGTCAAG
Seq A exon
GTGAGCTGTATGGTCTGGGAGAGCAAGGCCCTGGAGGCTCTCCCAAGCAGAGCTCTTCAGGTTACCCAGCGCTGTTGTCTTGCTGCTGAGATGAAAGATAAAATACCCCAACAAGTCAACTTCAGGAAGGAAGGATTTACTCTGAATCAGGGTTCCAGGGTACAATCCACTGTGGCAGGGAAGTTATAGCAGCAGGAGACAGAGGGAGCTAGTCATATTGCACCTGAAGTCAGGAAACAGAAACACAGACAGACAGATACACACACACACACACACACACACACACACAGATGCAGAGACACACAGTGAGACAGTCAGACAGACAGACAATGATATAGGCAGACAGTCAGACATGCACACACATACAGAGACAGAGACACACAGTCAGTCAGTCAGACACAGGCAGACAGACAGACACATACAGAGGGGGTGGCTGCATTCATCTTGCTTTCTCTGTCTTATTCAGTAGTCTTGGACCAGTTCATGAAATGATACTGCCCACTTTTAGGATGGGTTTTCCCTCAGTTATTCTAATCAAAATATTCTCTCAAAGGTAGGACCAGAAACTAACATAATCTAGATAATTTCTTACAGCATATTTAGAGGCTGGTCTTCTAGGTGGTGACTGTAGATCCTGTCAAGTTGAAAATCAGCATTAACCAGCATCGCTCAAATGTTGGCTGCCAGACTTGACTCATGCTCCCACAGGCCACATATTGCTGTCTGTTTTGTTCTGGACTCCTTAGATAATAAGTAGCAAGGTTCTATTTTAGAAGCATCTTCCTCTTGGCTTGCTAGATGGATTTATGGAGCTCCTTCAGGGGAAATGCCCATACAATTCATGAATAATAACCCGGTAGCCATGTTTATGAGACCAGAATATAATATGGCCTTGGAGGAAGAACGTGGCCTGCAGAGTTCGCTGAAGCTGGTAGGACAGCCCACTTGGACCCTATTCGTCAGGGTTACTATAGCAGGTCCCAGAGGAACTTCCTATCTAGGTCACTGGCCTCCTTGTTCATCTTCAAACAGCAGACTTCCTTGCCACTCTGCCTTCCAG
Seq C2 exon
GGGATACTCTGTGCAGACACATGTGCTGGGCTGTTGGAGAAAGTTTCATTGTCAGCCGTGGGGACAGTTTCCTCGATGGGACCCGTTGTGTGCCAAATGGTCCTCGGGAGGATGGGACCGTGAGCCTCTGTTTGTTGGGTAGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTGGAGTTCATGTCAGAG
R:
CCTGCAGCTACCCAACAAACA
Band lengths:
262-1322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]