GgaINT1005462 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6913567-6914062:+
Coord C1 exon
chr17:6913567-6913693
Coord A exon
chr17:6913694-6913916
Coord C2 exon
chr17:6913917-6914062
Length
223 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCCTGTCTGCCTCCTCCAGGGG
3' ss Score
10.15
Exon sequences
Seq C1 exon
GCCTGTCTGATGACCCAGCTTGACTTTATGGCTGAACAGTGTGCAGCAACAAATTTAAAGCCACTGTATCTCACTGTAGGAGTGCCATCCTTTTACACCTGGACTTCTGCTGTTGGCTTTGCCAAAG
Seq A exon
GTAAGAAAAGGCTGAGAAACCCTGATTTCTTTGTTTAGTAAAACATTTGTGGGCCTGACTGTACTTTTGAATCAAAAGGCCATTTCAATGATGCTTTTAGTTTCCAGGTGAAACTTAGATACTCTTGTTGACAGATTCTTTTTAGCTTCTTCTTACTGTTTGATGGCTGTGTGTCCTCCAGAGAGGGTAACTACTTGCTCCTCCTCCTGTCTGCCTCCTCCAG
Seq C2 exon
GGGACACGCAGTGCAAGCACATGTGCAGGACCATTGAGGATGAATTCATGGTAAGCCGTGAGGACAGTTTCATAGATGGAACCAGATGTGAGCCTGATAACTCTGAAGATGGGACTTTCCATCTGTGTGTAGCGGGAAGCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.0=2.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCTGATGACCCAGCTTG
R:
TCCCGCTACACACAGATGGAA
Band lengths:
263-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]