DreINT0026230 @ danRer10
Intron Retention
Gene
ENSDARG00000076270 | adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:ZFIN;Acc:ZDB-GENE-070814-7]
Coordinates
chr8:45255711-45256069:-
Coord C1 exon
chr8:45255943-45256069
Coord A exon
chr8:45255860-45255942
Coord C2 exon
chr8:45255711-45255859
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
3' ss Seq
TTTAGCTCCCTTCCTTTCAGGTG
3' ss Score
11.46
Exon sequences
Seq C1 exon
CTTTGTGATTCAACTCAGCTTGAGTTCATGGCTCGTCAGTGCTCAGCCACAGACCAGCAGCCTCTGTCAGTATCTACAGACTCTAAGTCAATGTATACCTGGATCCCTGCTATAAGCTACAGCTCAG
Seq A exon
GTGCTCCAAATAAAGATCTTTCTATTGAAATGTTCTTTTTTTTTGTTTTCATCTTATCTGATCTTTAGCTCCCTTCCTTTCAG
Seq C2 exon
GTGACTCTCAGTGTAAACTGATGTGTCGTTCACGTGAGCAGGACTTCATGGTGAGTCGTGGGTCTCAGTTCATTGATGGGACGCGGTGTGAATCTGATAATCCCGTACCACATGGGTCAATCTCTGCATGTCTAAGTGGAAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076270:ENSDART00000146364:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(3.9=4.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTGAGTTCATGGCTCGT
R:
CGACTCACCATGAAGTCCTGC
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]