BtaINT0021740 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012147 | ARRDC1
Description
Bos taurus arrestin domain containing 1 (ARRDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080365]
Coordinates
chr11:105543199-105543495:-
Coord C1 exon
chr11:105543445-105543495
Coord A exon
chr11:105543354-105543444
Coord C2 exon
chr11:105543199-105543353
Length
91 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
AGTCCCTGCTCTCTGTCCAGCCA
3' ss Score
6.56
Exon sequences
Seq C1 exon
GGAGCCTGCCTGCTGGAGAGCACAGCTTCCCCTTCCAGTTCCTGCTTCCTG
Seq A exon
GTGAGAGCCCGGCCCGGCCCGGCGGTGGCAGTGGGTGAGGGTGGGTGGGAGGCGGGGGACAGTGGGACCTCAGTCCCTGCTCTCTGTCCAG
Seq C2 exon
CCACGGCTCCCACGTCCTTCGAGGGCCCTTTTGGGAAGATTGTACACCAGGTACGGGCCACCATCGACACACCACGTTTTTCCAAGGATCACCAGTGCAGCCGTGTCTTCTACATCTTGAGCCCCCTGAACCTGAACAGCATCCCAGACATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012147:ENSBTAT00000032616:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(12.8=100)
A:
NA
C2:
PF0033924=Arrestin_N=PD(33.8=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTTCCCCTTCCAGTTC
R:
GATGCTGTTCAGGTTCAGGGG
Band lengths:
174-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development