GgaINT0124232 @ galGal3
Intron Retention
Gene
ENSGALG00000008475 | ARRDC1
Description
NA
Coordinates
chr17:2383585-2384282:+
Coord C1 exon
chr17:2383585-2383635
Coord A exon
chr17:2383636-2384127
Coord C2 exon
chr17:2384128-2384282
Length
492 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
TCTTTCTGTCTTGACTCCAGCCT
3' ss Score
6.37
Exon sequences
Seq C1 exon
GAGTCCTTTCAGCTGGGGAGCACAACTTTTCCTTCCAGTTCCTGCTGCCAG
Seq A exon
GTACGATGCACATGGCTGGAGGCCTTTTCATGTGAGCCAGGGCTTCCCCAGCTTTGGGAGCTGTGCTGAGGCCCTGGACAAGCTGGTGGAGGCTGGCTAGGCCCAGAGGTGCCAGAGGGGAGTGTAAGGTTGGCCACAGACAGCAGAGGAGTTTAGGCAAACTGTACGCTCCTACTTGGAGCAAAACTTGGTCTGCACAGCCACTGACAGCTTGGACAGAACCCTGTGGGCTTTCACCTGGGCGCAGTGGTCCTGGCCTGCAGCTAGCCAGCTGTCCTGGGTGCAGTGTGCTCTGCTGTGGTGTGGGGGTGCCTTCTGCTGGGAGTCTGGATGACCCAAGAGCTCATCCCCAGGTCTTTTTTTGGGAAGTCAGACGTGCCCTGTCTCCAGGATGCTTGCACAACACTTCAGGTGAAGAGTAACTGTCTCAAGCACAGAGATGCTTGGCTTAACTCAGTCTTGTGACACCTTTTCTTTCTGTCTTGACTCCAG
Seq C2 exon
CCTCTGCTCCTACATCATTTGAAGGTCCTTTTGGCAAGGTTCTCCATCAGGTGAAGGCTGTGATAGACACACCTCGCTTCTCCAAGGACTACAAGTGCAACAAGATCTTTTATGTTCTCTGCCCTCTCAACTTGAATGACATCCTTGATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008475:ENSGALT00000013811:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(12.8=100)
A:
NA
C2:
PF0033924=Arrestin_N=PD(33.8=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCTTTCAGCTGGGGAGC
R:
CTCAATATCAAGGATGTCATTCAAGT
Band lengths:
206-698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]