MmuINT0019321 @ mm10
Intron Retention
Gene
ENSMUSG00000026972 | Arrdc1
Description
arrestin domain containing 1 [Source:MGI Symbol;Acc:MGI:2446136]
Coordinates
chr2:24926878-24927176:-
Coord C1 exon
chr2:24927126-24927176
Coord A exon
chr2:24927033-24927125
Coord C2 exon
chr2:24926878-24927032
Length
93 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AAGCCCTATTATCTCTGTAGCCA
3' ss Score
4.56
Exon sequences
Seq C1 exon
GAAGTCTGCCGGCTGGAGAGCACAACTTCCCTTTTCAGTTCCTGCTTCCTG
Seq A exon
GTGAGTGGAAAGCTTGTGGGGACAGCAGCCTTGAAATGGTGAGACCCACGGTGGGAGGTGCTGGGTGACAGCCAAGCCCTATTATCTCTGTAG
Seq C2 exon
CCACAGCACCCACATCTTTTGAGGGACCCTTTGGGAAGATTGTACACCAGGTGAGGGCGTCCATCGACACTCCACGTTTTTCCAAGGATCACAAATGTAGCCTCGTGTTCTACATCCTGAGCCCCTTGAACCTGAACAGCATCCCAGATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026972:ENSMUST00000028349:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PD(0.1=0.0),PF0033924=Arrestin_N=FE(73.9=100)
A:
NA
C2:
PF0033924=Arrestin_N=PD(33.8=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGAGCACAACTTCCC
R:
GTTCAGGTTCAAGGGGCTCAG
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types