BtaINT0022493 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21773573-21775195:+
Coord C1 exon
chr2:21773573-21773647
Coord A exon
chr2:21773648-21775125
Coord C2 exon
chr2:21775126-21775195
Length
1478 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CTCTGAATGTTTTATTATAGGCA
3' ss Score
7.43
Exon sequences
Seq C1 exon
TATCCTTGCCATGAAAAAGAGGACGTGATAAGTTGTTCAGCTTATGAAATTCAAGTTACATGTAAATTCTGCCAG
Seq A exon
GTGTGTATGCAATAATTTGGTATTTTGGGCTATTCAAATTTTATTTTTCATATTGTAGATTATAAGTATTTTCATAGGTTATTTCTAGATCATGTTTTTTTAATATATAAATAAGGAATACTTATTTATATAGTATGTAGTTTAGCTGATACTCCTATTGTATTTTTAAATTATTAAATAGAGCATCAAAGTACAGTCAACTATGACAAAGATAAATATATATATTTGATTTCTCCTTAAATGAGTTCCAAATAATACTAGTCCCATGAGGTGAAAAAGGGTTCAGATAGAAAATGGATGTGGCAGATATGCTGCATTCTAGGTGCTCTTCTGGTCATTTCCCTTGAATATACTGTCTTTGAAAAGTCCTGCCTCCCAAAAGAAATAGTCTAGCACTTCCCAAATCTGACTATAATAGCTATTGTCATCTCTGTTTGTGAAGGGGTTTTTCTGAAAGGTTTTTGAAGGTTACATATTTCTGAAAGGCTAACAAACTAGTGTTGAAAAAGGAATAATTTTACAGAATTGTTAGTTCATTCAAATATAATTGTTACATGTAATTTGTAGGAAGAAAGCAAAAACAAAAACTTGCAAGTTAATGGAAGGACTAATTGGGAACTTTCAAGTCTAAATCAAAAAGTAGGAAAATAATATTGACTTGAAGATGTCTTTTTTTGTAGTTTTTGGTTTAAATCAGGATCCAGGAAAGTCCCCATATTGTATTCTGTTTAATATGGTTTATTCAACCTCTTTAAACCTAAAGCAATTCCCCTCTACTTTCTCTTTTCTTTTATTCCCCATGACATTTATTTTTGAGGAGACCAGGTCTTTCGTGCTGTAGAATTTCGCTAATTGTATCTTAGCAGTGGTGTTTGACCTTTTTGTCTATCTCCTTTATTTCCTGTAGTAGAATCTAGAAAAGCTTGATTCGATTTCAGGTTTGGATACAGCCGCACCCTCCGCCCCCCACCACGAATACTTAATGTGCTTTCTGTTGTCTCATCAGGGGACTCAAAATATTTGTCCCACTTTTGGTGACGTTAACTTAACACTGACCCATGAGTTCAGATGCTGTCAGCCTGACGCAGCCATTATGAAGCTCCCATCACCTTTGCTCCTGATGGTTTTATCAGACATTGATGAGAGTTGCCTATCCATTATTTCATTGGTATTTAAAGTAGTGATCTTCTAATTATTTCATTCTTTCCACACTTATGCTACTGAACAGGAAAGGTTTAACCTAATAGATCAGAGTTCTTAACAATTTTTTCTATAATGTAAAATCTGCATGTTGCATGTCTTTATTCATAGTAAGAAAATGGAAGGTGGGGTTAAGATGTCGGTAAAACTGTTTTATTTCACATTCAGATAGAAAAGGTAAAAAACTTAATGAAAATCAAGTAATACTACATTTTAAGTTCTTTATTTAAAAATCTGTACTGTAAAATGTTTAACTATCTCTGAATGTTTTATTATAG
Seq C2 exon
GCAATACAAGGACCTGTGGAATATGAGTGATGACAAACCGTTTCTATGTACTGCCCCTGGATGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295:ENSBTAT00000002963:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138941=zf-C2H2_4=PU(34.6=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]