GgaINT0046053 @ galGal3
Intron Retention
Gene
ENSGALG00000009287 | ATF2_CHICK
Description
NA
Coordinates
chr7:17797236-17798046:+
Coord C1 exon
chr7:17797236-17797304
Coord A exon
chr7:17797305-17797976
Coord C2 exon
chr7:17797977-17798046
Length
672 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CCACTGTCATTTTAATACAGGTA
3' ss Score
7.26
Exon sequences
Seq C1 exon
TTCATTGCCATGAAAAGGAGGATATGATAGTTTGCCCTATGAAACAGATTTATATGTGAAATCTGACAG
Seq A exon
GTACGTGTTTCAGTATGCTTGGTGAGTAAGCAAATCAGCACAAAATAGAATAGTGTTAGTATCCATTACTTCATTCTTATATATTTTTTAGCTTCCTGGTGATTCAGTTGTATAGCTGAGGTGTTATTAAAGTATATATGTGTTTTGCAGTTATATTTATAAAAGAGTACGTAGTGGGCTATCTACTAGCTTTGCTTGGCATGGGAAAAAAAATAGATGATTATGAAAAACTTAACATGATTATGAAAAAAACTATCTTATCAACCACTTTAATTTGTTGGCACTGTGGCGTTGAGTACTCATTCATCTGCTGCTTTGTTCTTTTCTTGGCGGGTGGTGGAGGGAATTGAGTAATTGTTACAAGATAGTTTTCTTTCAGTAACAAACTGTCTTACTATGTTCTCATGCACCTTTTGCAATGGATTACATTATGTACAAACACTTGCCTTTCCAACTGAGACCCACGTTTAAAATCTCTGTCTCTATTTCATTTTGGCTACAAACTTACAGAGTTTGTAGTCCAGATGCTACTCACGTGCTAGGTATTTAGATTCTTAGTGCAGTCAGAAGGCAGTTCTTGCTTATACAATATTAAAGTTTCGCATGGATTTTGATATGTTGATGACTTGTTGCAATATTTGTAAAATGCTTTCCACTGTCATTTTAATACAG
Seq C2 exon
GTAGCACGACGACCTGTGGAATATGAGTGATGACAAACCCTTTTTATGCACTGCCCCTGGATGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287:ENSGALT00000015107:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138941=zf-C2H2_4=PU(34.6=56.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]