BtaINT0023678 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004263 | ATP6V0A4
Description
ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
Coordinates
chr4:103216556-103219363:-
Coord C1 exon
chr4:103219245-103219363
Coord A exon
chr4:103216773-103219244
Coord C2 exon
chr4:103216556-103216772
Length
2472 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TGTGTGTTTTCCACCCCCAGGTT
3' ss Score
11.51
Exon sequences
Seq C1 exon
ATTTGGAACTTGGCTTCAAACAAGCTAACATTTTTGAACTCCTATAAGATGAAGATGTCAGTTATCCTGGGAATTGTCCAGATGGTTTTTGGTGTTATTCTCAGCCTTTTCAATTACAG
Seq A exon
GTAGGTTTTGTGATGAACTTTCTGCCTGTTGGTCTGACCACGTCGGTGGTGAGTGGTGACAGAGCCACCAGTTCAGTCCTGTGTCCATCTGTAAGTTTCCTTCCTAAAGTGTCTGAGAGTGTTAGTTGCTCAGTCGTGTCCAGCTCTTTGTGACCTTATGGCCTGTAGCCCACTAGGCTTCTCTGTCCATGGGATTTCCCAGACAAGAATACTGGAGTGGGGAAGCCATTTCCTCCTCCAGGGGATCTTCCTGACCTAGGGATAGAACCTGGGTCTCCTGCATTGCAGGCAGATTCTTTACCATCCTGGGTCTCTTGGCTTGAGCTTGGACAAGCTGATTTGCCAGAAATGATACCTCTGTTTCTCCTGAGCTGAGTGCGCCTTTCACCTCAGAAATATTTGAGAGTTCAGTAAGAGACTGCAAGCCCACAGTGCTATTGTTGCTGTTTAGCCTCATGGTTGTATCTGACTCTTCACAACCCCATGGGCTGCAGCTACGGTGCTCGGTCTCCTCCCAACCTGCCAGGCCTCAGTTGCTGCTATGTCTGGGTTTAGCCCCACTGCATTTGGGCCAGAGTGCCCTCAGATTCTGAATTCCACTTGGTATTCATTTCTTCATACTGGCAGCAGCCTCTCTTTCACTTCTTTGGTGGTTAATTTCTCCATCTGTCCTTCCTGTTATGCTCTATCTCTACCAAAGCTTCTTAAACTTGTATATTTGTGCTAAAGTTGTAAATGCTTGAAAACAGCCTATTTAGAGACCCTTTGTGGACATGGAAGCTTGTAGTTATCACCAAAACCCACCTGCCAGGAGGTCAGTACCGTACTGCAGAAATGATGCAGAGTTTAGAATCAGAGATTTGACACCCAGCACGGCAACCCACTCCAGTGTTCTGGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCCACATTCTTAGGCTGCAAAGAGTTGGACATGACTGAAGCGACTGAGCATAGCCCACACACAGCACAGGTAGCTGGGTGATCATAGGTATGTTGCTGAACGTGTCTGTCATCCACCAAAACCCACCTTCCAGGAGTTCAGTACCGTACTTCAGAAATGATGCAGGGTTTAGAATCAGAGATTTGACACACTTGTAGCTGTGTGATCATAGATGTGTTGCTGAACGTGTCTGTGATCGTTTTCTTCCACAGAGTGGGAATAGAGGAGTCAGAATGGGTCAGTTATTGTGTAGTAACAAACAAGTCTCAAATCTCAGTGTCTCAAGGCCATGATACATGTCATGGTGGGCCACTGGGGGTGCTGCTCATCTTATCCTCACACTAGGACCAGGGCTGATGGGCGGCTGCCACCTAGAAGTTGCCAGTTGCTGCGGCAGGAAAGGGCAGTCAGTTACACACTGACTCTTAAGCTTCCACCCAGAGGGACACATGCCACCTCTGTTCCCATTTCATTGGCCAGAACCAGCCTTGTGGTGCCCCGTGTCTATTGGAAAACCAATAGACATATGCTTCTACTTGAAAAATAAGAACTATTTAGCGAGTGAGTGAATGACAACGCCCTGGTACTACTGCCTGCCTGAAAGTGCTGTGAGAGTTACCCAAGAGGTAAAACCAGGATAAAACCAGAAAGGACTTTCTGGGTGGACTGTGGTTAGCATCGCATGTCAGGCCAGCCTTAACAATCTCTCTCAATCCTGCTTTATCACGGGATCTCCATTTTCCCTGCAATAGTTCTTATACTTAACAGGCTCTTTCTGACGTTTTACCTAGGGGTCCCCCAGCTTAGTCTCGTGGGACTCTCCCTGTGTCTTAGAGCAGGAGTTGACAAACTTTCTGTGTAAAGGGCCAGGTAGTAACTATTCTAGGCTTTGCAGGCAGGTGGTCTCTGTCACTGCTGCTCAGTTCCAGTGTTGTAGCGTGAACGAACACTGCCACAGGCAATGCGTAAACAAATGAGTGTGACTATTCCAGTCAAATTAAAACTGAAATTTGGATTTCCTATACTTTTCTTGGGTCATAAAATATTCTTTTGATTTTCCCCAAACCATTAAAAAATGTAAAAACCAGGCTGCACAAACTAGGTAATGGGCTCAGTTTGGCTCGTGGGCTGTTGTTGGCCAGCAACTGTTTCAGAGCATCCTTTTGAGAATAGCTGTCAAGCCCTGTGTCTGTATCCTATGCCCTTGGCTGTGTAGTATGAATTGGGTCTGCATGGGAAGCTGTGGCTGGGTCGCCAGCTGTCTGTGTGGGCCTGTCCTTTGCCTCATGACTTTACCTTCTGGACCCTGGCTCTCTCTGAACTGTTTGTGCAAAAGCACCTTTCTTTCTCATTTTTCCATCCATGCATGATTACTACTTACCTGGAGAGAGGATGCAGGATTCATAAAACAAAAAAAAAGAACACTTGGCTTTTTGGAGAGAGTGGTGAGTGACTGGCATTCCTTCAGTGTTCTCTCTTGTGTGTGTGTTTTCCACCCCCAG
Seq C2 exon
GTTCTTCAGAAACACTCTGAACATCATTCTGCAGTTCATCCCTGAGATGATTTTTATCCTGAGTCTTTTTGGATACCTGGTCTTCATGATCATCTTCAAATGGTGCTCCTTCGACGTCTCTGTGTCCCGGCGAGCCCCAAGCATCCTTATCCACTTCATTAACATGTTCCTATTTAACTACAAGGACTCTTCGAATGTACCTCTGTACCAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004263:ENSBTAT00000005588:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]