HsaINT0015100 @ hg19
Intron Retention
Gene
ENSG00000105929 | ATP6V0A4
Description
ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:866]
Coordinates
chr7:138417622-138418999:-
Coord C1 exon
chr7:138418881-138418999
Coord A exon
chr7:138417839-138418880
Coord C2 exon
chr7:138417622-138417838
Length
1042 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGTGTGTCTTCCACCCCCAGATA
3' ss Score
11.56
Exon sequences
Seq C1 exon
ATTTGGAACTTGGCTTCAAACAAACTCACATTTCTGAACTCGTATAAAATGAAGATGTCGGTGATCCTGGGAATTGTCCAGATGGTTTTCGGTGTCATCCTCAGCCTTTTCAATCACAT
Seq A exon
GTAAGTTTCTTGATGCACTCTCTGCCTGCTCTGTCTGATCACACTGATGATGAATGGTGACAGAGCCACTGGTTTGGGAACTGCATCTCTCTGTGCAAGTTTTCTTCCTATGAGGGGTACTTCCCTGGGCATCTGGGCTTGAGCCAAGACAAGCTGGTTGGCTGGAAATGGCAGCACCTCCGTTTCTCCTGAGCAGAGTCTCTCCAAGGTAAGTGCTCCTCTGGCCCCAGAAATATTTGAGGGTTCAAAAAAAGACTGGAGGCCAGGTGCGGTGTCTCACACCTGTAATCCCAGCGCTTTGGAAGGCCGACAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAAGCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGTCGGGCACCTGTAATCCCAGCTACTTAGGAGGCTGGGGCAGGGGAATCCCTTGGACCTGGAGGCAGAGGTGGCAGTGAGCCAAGATTGTATCGCTGCACTCCAGCCTGGGTGACAGAGTAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAGAGAAACCATTCTTAACTTCCAGGCTGTACAGAATCAGATGATAGTCTCCATTGGCCTGTGGGCCACACTTTGCAGACCCCTATCTTAGAGCATTCTTAGGAAAAAGCTTCCAGGTCCCCATTATATATCCTCTTGCCTTTAAATGTGCAACTCTGAGCTAGGTCTGCATGCGAAGCTGTAGTCAGATCACCACCCTCTCTGTGTGGGCATGACCTTTGCTTTAGACGTTACTTCTAGACCGTGGTTCTCTCTGACTCTTTTGTGCAAAAGCACTTTCCAGTATTTCCTTTCAATTTTCTTTTCTATGCATCCATACAGGATTGCTGTTTGCTGGGGGGGTGGGGGGTGCCGTTGTTTGCCAGTAGTGCAAAAAAAAAAAAGATAGAACATTTTGTGCTTTTGTGCTTTGAGAGAATAATTAAGTCCTAACGTTCCCTTGATGTTCTATCTTGTGTATGTGTGTGTCTTCCACCCCCAG
Seq C2 exon
ATACTTCAGAAGAACTCTCAACATCATTCTGCAATTTATCCCTGAGATGATTTTTATCCTGTGTCTGTTTGGATACCTGGTTTTCATGATCATTTTCAAATGGTGCTGCTTTGACGTCCATGTATCTCAGCACGCCCCCAGCATCCTCATCCACTTCATCAACATGTTTCTGTTTAACTACAGTGACTCTTCCAACGCACCCCTCTACAAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105929-ATP6V0A4:NM_130840:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAACTTGGCTTCAAACAAACT
R:
TGATGTTTGTAGAGGGGTGCG
Band lengths:
334-1376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)