GgaINT0112358 @ galGal3
Intron Retention
Gene
ENSGALG00000012810 | ATP6V0A4
Description
NA
Coordinates
chr1:58398394-58399675:+
Coord C1 exon
chr1:58398394-58398512
Coord A exon
chr1:58398513-58399458
Coord C2 exon
chr1:58399459-58399675
Length
946 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TCTTTTCTTATTCTTTCCAGCTA
3' ss Score
8.95
Exon sequences
Seq C1 exon
ATCTGGAACATTGCATCAAACAAGTTGACTTTTCTGAACTCCTACAAAATGAAGATGTCAGTTGTGATTGGGATTGTGCATATGATTTTTGGGGTGATACTCAGTCTCTTTAACCACAT
Seq A exon
GTAAGTCTGTTTCACCAAGCCCATTGTTGCTGCACATAAGTCCTCATCTCTAAACTAGTGTCCCACATTCAGAGAAAGCCTCATATCTCAGTCTGTTGATTTGAATTTCACTCTTTCCCCCATAGCCTTTGTACTGACATTCAAATCACTGCTGTTATAGAGTGTGAAGTCCAAAGGCCAGATAGATGACCATTACATTGTAATTATTCTCTTGGGTGAACTGTCTTTTTCACTTTCTCCCTTCATCTTCTTGATTTTGCAGAAATGATAAAATGGACCACATTAACAATATGCCAACGTCTTTCACTTTTGGTAATTTCTATCTTGAAATTCTTTAGGTCTAATCCAAAGTACTCTGATACCTTGCACGCTGTGTGTACATCTCTTCCTTGTGACTCAGTGGGCCTTTGGTTAGGATCTGTGTATATGCATGTCTATTCCTCTCCCTCTGTATTCTACAACAAAATCGAGAACTGGAGGTAGAGTAGAGGGACTGAAACCACTATCTCGAGAGATTCTCCATATGCTGAAGGTTTGTAGTGACCAAAAGGATAGAAAATGTTTGAAGATGAAAGAGAGAACTGCACAGAACTAGTTCTGACCTTCCTCAGCTTACAATGCTTTGTAAATTTGCTTTTATTTTATTTTCTGAAAGTAGGTTTTTATTTAAATGTGCTAATCTTTTGAGATGCTCAGACGCTAATGGGTCAAGCACAGGAACCTGAAGATAATCAGTACAGAAAAGCTTTTGTATTTAAATACCGGTTTTCATTCATACAGACTGCCATTAAAGAGGAGTTCTTGGCTAGTAATAGTAGTATGTTTCTAATGTGATTTTTCAAAGACTAAATAGTATACACACACAAGCAAATTTGTCATGCTTGGGTGCAACTTCACATTAATACTTACTGTATTAATTGTAGCTATCTTTTCTTATTCTTTCCAG
Seq C2 exon
CTACTTCAAGAAATACATAAACATTATCCTGCAGTTCATTCCAGAGATGATCTTTATTATATCTCTTTTTGGCTACCTCGTCTTCATGATTATTTTCAAATGGTGTCATTTTGATGTCCACTCATCACAGAGCGCACCAAGCATTCTCATCCACTTCATCAATATGTTTCTGTTTAATTACAGTGATGCTTCTAATGCTCCACTATATCTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012810:ENSGALT00000020900:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAACATTGCATCAAACAAGT
R:
CTGGTGCAGATATAGTGGAGCA
Band lengths:
335-1281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]