BtaINT0023890 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63087222-63093166:-
Coord C1 exon
chr6:63093068-63093166
Coord A exon
chr6:63087268-63093067
Coord C2 exon
chr6:63087222-63087267
Length
5800 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTTTTGCTTTTAAACTTTAGAAA
3' ss Score
7.52
Exon sequences
Seq C1 exon
CAAATACCTGATGTATCACCAACAGGTCGCTATACAACACTGGTTCCTCTCTTATTTATTTTGGCTGTGGCAGCTATCAAAGAGATAATAGAAGATATT
Seq A exon
GTAAGTACTTTTTTTTCATAAATGTAACACTGTTATTTTATGTACATATTTTAAAATAGCAATTTCTTTCTAAGTTGTTTTATTCTTGATACAGGCTGTTTAAAATATTCATCTTAAAAGTGTTTAAGATAATGCTCCCATTCCTGGAGTTAATTCCTCTTGATTTCTATAGGATTAATATTACAGAATGCTTGTTACAGTGATCTCTTAAGTTTGTGCCTTTGTGATGAAATAAATTAATTTGAATGTAGTAATTAGCTTAGAGAGAAAACTGTATTTGAACATTATTTTCAAGTATGCTCAGTTTCAATTTGAAGGTTATTTCAAGTTAAAACACCATAACCTCCAAGTTATATAAGGTAAAAAAATTTTTTTATTTTTTTATTTTTCCATTTTCCGTAGTTTTCACCTCATTAAACACCTTTGATTCTTTTTCATTTTTTTTTTTTACTAGTTCTGTTTCCTTTTATTTTATTAAAGGAAAGTAACAGCGAATTTGCTATTTTTATTATTCTGTAGTAGTAAAGAAAAGGGGAAGTCAGTCAGTTTCCCCTTGATAAAATAAGTTGCCCAAAATAAAATTAGGCTTTTCTTTTTCCTCTGTTTCACCATTATTTTAGCTACTTTAGTTGAGGAAGCTAGTATTTTTTTTCTATGCCCTTTAAATACATTGGCTGTCTGAAATGACCATCTGTCAAGCCTTAGGCAAGTCAGATGGTAAGATGAGGAAAGACTGAGACATTCTTTAGAAAGCTCCAATGTAAAGTTGTACAAATATTGATATTATTTTGTAAAGAATCAAATTGGGATCTCATGAAGAACACATGAGCTGTAGCATTGTTAGGCCAATTAGAAACGGGTCAACTGACCACAGAGATCATCAGCCTCACCCAAGTATCTAGGTTGTATGTGTGCATGCACCTGTGTATAAACCATCATAATCTCTAGTTGAAAATGGCTTACTTACTGGGACCACTAACTGAAAATTCATGAGCCTCTTTTCTTGCCTGTATCACTCTGCGCAGACACACTCCTTGACTTGCACTTGGCGGTCCTTGAGAATTGGTCTTTAAAACAGTTGTCTTTCTTTGCCTTTTGCATTCCCCTTTCTTCCTCTGTTTAGCCTATTTTTCATTGAGTACCTCTTATTTGCTAGGTATTGTGCTGTTGTTTTTGCATTTTTTTTTCATTTAATTTCCTTCAGTGACTTTGAAAGCTAGATTTTAGCTTCATTTTAAAGTTCAAAAAGCCGAAGCTTAGAGAGGGCATGTAACTTGTGCAAGAAACTGTTAAAATCTGAATTCCATCCAGTCCTATGCGCTTCCTCTGTTTTAGTGTGGTGAGTCACCAGCAATAATAATAACATTTATTTAGCTTCAGGGAGATGGAGGAGAGGTAGGTTCAGTCCCTGAGTTGGGAAGATCTGCTGGAGGAGGAAATGGCAATCCACTCCAGTATTCTTGCCTGAAGAATGCCATGGACAGAGGAGCCTGGCAGGTGATGGTCCAGGGGATCACAAAGAGTCTAGCATGACTGAGCACACACTACAGACATAACAACCTTCAAAAGATTACTGCTATTATCCCCATTTTATAGATTAGGGAGAGGAGGCACAGAGGGGTAAGGTAACTTGCTCAGGGTCACAGGGCTAATAACTGAGACTGTCAGAAATCAGACAGTTTGGTTCCAGCGAGTTCTGCCTTATAATCACTGTTATAAGCTGCTTTTCCTTTTTTCTTCCCCTCCTTTCTCTAGAAAAACTGCAAGTTCTCTAGCTATTGTTTCTAGTATCCTTTTCTATGAAAATATATGGTAAATAAAATGGTAGGCAAGAAATCTGCTTGTTTTTAACAGAACTCTTATTGGCATAGCGTAATAATTGGGTACTCTTGAGAAGCAGCTACCCAGGCAATTCCTGAAGGGTGTAATAGTTTTGTGGGCAATAAGAGCACCATGTGAAGTAGTTCTCCAGTAAAAACATTTTTAAGAAATTGACTAAAAATATTCTGGAGGAGTGGTTTAATACATTTATATCAACCTGTAAAGTAATAGGAAGATTGAAATGTTACTTTCTAGAGAAGGAAAAGCAATAAAATAATAGTCTAGATAGTTGGACAGAGTATCTTTATCAGTAATTATTAATACATTCATTTGTTCATTCATTCAGCAAAAATGTATGAAGCAGTGCTTAGATGCCAGGCATTATTCATTAGGATTTGTATTCGGATGTGTTAAACTTTTGCTGCAGTGATAAATCATGTCCCAAATGTCAGTGTCTTTAACATAAGTTAATTTTTTATGTACTCGAAGACACTGCGCGTTTTTGTCCAGGAGGAAGGCAGGGAGGGAAGTCCACTGTTCATGTAGCCACTTAGGAATGCAGCTGAATCAGGGCTCTGCTTTGGGGGATATCAGTGGTCACCAGAGCAGAGGAGGAGAGAGAACAGAGGGCCTCACTTCTTGTACATTTTGGCCTAGAAACGGTACATATCCCATCTGCTTACAGCACGACATTAGAATATACAAAAGGGAGCTGTAATCTCAGTGTCCATAGGTATTTGTGGTTGTTTAGTCGGTAAGTCATTTTTGACTTTTGAGACTCCACGGACTAGCCCACCAGGCTCCTCTGTCCATGGGATTTTTCAAGCAAGAATACTGCAGTGGGTTGCCATTTCCTCTTCCAGAGGATCTTCCAAACTCAGGGATCCAACCCACATCTCAAACCCGCATGTTCTGCATTGTAGGTGGATTCTTTAACGCTGAGCCACCAGGTAAGCCCTGCCCATGAAGACAGAGGAGAACTAGATATTGGGCTTCCCTGGTAGCTCAGCTGATAAAGAATTCACCTGCCATGCAAGAGACCCCAGTTCAATTCCTGGGTCCGGAAGATCCCCTGGAGAAGGGAATGGCTGTGCACTCCAGCATTCTTGCCTGGAAAACTCCATGGATGGAGAAGCCTGGCAGGCTTCAGTTGATGGGTTCCCAAGGAGTTGGAAATGACTGGCAATTAAAATTAACACTTTTGGTAATAGTTGGTATGAAAACCAAGTATCTTAGATTAAGTGGTGTCGTAAAGATAAAGAAATATAGAAAAATGAATTCAATATATATTTAAGAATAAAATTGACAAGATATTACCATCTGACATTCTACATATCCTGCTTATCTTATTACTGCTTCATCTCCAACCACTAGTGTGTAAGTTCCCTGAGAGCAAGAGTTTTTGTCTTTTGCTCATTGCCATATCAGCAGTAGTAACGGGATCTGACACAGTGCTTTGCCAACATTTATTCTATGAAGAAATAGATTGCATGGGAATGAAAAGGAGAGAAAGTACTTACGAATCTCAAGTTCCTGGTTTGTGTAAGTGGCTGCTATATGGTTCCATGTCTGAGACAAGTAGCAGGTCTTGGGGGATAAAATCAGAGATTGCCCTTTAGACATAGTTTGAGATGCATTTAAGACTATCAAAGGAAACTGCCAAGAAGGCCACTGAATGTAACCTTCTGGAGCTCAGATGAGAGTCTTGACTGGTATGTTTGATGATGATTATCACTGAAATTATAAATGAGCTGAGAGAGTATTGAGTGAGAAGCAGAGAAGGCAGGGAGTAAGCGTTGAGGAAATCCGTCACTGAGAGCTGAAGAAGAAAGGGCCAAGGTGCAAGTAGAACGCCTGGGCTTGATGTCTGAAGACATGCCTTGAGAAGGAAGGGTTCCCAGAATGAAGGGGTGGTCAGCACTGCACACTTAAGTACTGTAAATTTCATGATGCAGTTTATACAGTACAGTTTACTGGAGCACTGTCAATCAAATATTGATAATAGTAAATCATTCACTAGTTCTCAATGATAGTAAATGAATTCTGATTACAACTCAATAGAGGTATTTTAATTTAAGGAATAGCTATATACATTTCTTCCAAACTATATAAGTTTTAAAAGGAATAAGGATCTTCTTTGGAAACAAAGATGCTTTCTTTTTGTAGTAATATGATTAGAATCTATCTGGGTTGGATCCTTATGTATATTCAACACAACAACGTCTCAACAAGTAACCTAATTTATTGTGTGGTAGGAAGGTTGAGGAAGGAGAGGCTCATGTATAAGAATTCTCTGCAGATGGAAAGTAATATTCAGGATCTCCTTAAGTTTCACTAAGATTAAATTTCCAGTTTAAGTTGAATGTTTCATTAATTAGCTTTTATTTGTCTCCCTCAGTTGGAAATCTAACTATTGTCTGTCATAGATGTGCGTTGTTTTGAAAATATTGGCACCACCTTCAAATACCTAAATTTCCCTTGGACTATTATTTTGGGCCAAAATTTATTTTGGGTTGCTTCCTAATTTTCCAAGATTTTTTTTTTAACAAAGAAAAAAAAGAGTAAGTAGTTTAGAGTTTTATCAATCATAAAATATTCTCCACTGATGCTGTAAAGTAAACAGAACTTTAAAAATTTATTTGCAAACCTTTGCTGTCAAATCATGTGCTTACTTTTGGAAGCAATAACTTGTCTATTTAAAGTCTGCATTATGACACTTATTAGCAAGTGTTTTATTATGGGAGAGAATTGTAGTGTGTTCCCACATGTGGATGTGGCAAGAATTCTTTTCAGCAAGCCTTCCGCAGAGGCGTTCTGAATGCCCCATTTGCATTTTGCGCAGTTCAGTGGCTGATTGTTTGGATGAACTGAGCTCACACTACCAGCTATTATGCTGCTCCTCGTGAGCATTGCTGGGTCTAGGAGTGCTCATCTACAGGCCCAGGCTTTTGTCTGGAAAAATGTTTTCATTTGTGCCCTGTGAGTCCAAAAACCATGTTTCTTCTTAACTCATTTGTTTTGCATTCATGCCAACCCACCTTGTGATCAAATATGTGTAGCTAAACCTGACTGTTGGGCTTTATATGATAGAATATTTGAGCTCAGAATCAGTTACGCTTAACACTCCTGCAGTGTCAGCAGAGGCAGCTGTGTTATACTCAGTGCTGTAAGTTTAGACAGAAGCCCTGGAAAGCCTCTAGTTGAACTGTAGAGAAGTTAGCCCCCTGACCACTCAGATTCTCACCTTTCCTCTGACCCTCCTTTTCTCTTACTGCTATACAGTCTTGGCTTTGGCAGCTCTTCAGATTCACCCACCTAGATGTAGACTAACTCGCTTGTTTAATGCTCAATTTATTTGTGCTTTGGGAGGAAAGAACATGAGATTCAGTGACTTCTGAAGGTGGGGGAGGGGCTGTTGGGACCAGTGGGTAGAAGCAGTGTTGTGCCAATGGTAGATGTGTTGGTTCTCGTTGTTGACAGACATTGGCACGTCATTAAATTACAGAGGATGTGCTTAGCCTAATTAGATAATGAATTTCATGAGAAACTGAAAATATTTTGGTATCATTGTTCAATGGTAGTTATTACAGATAATTCTCCTGGGCACTCTTCCTTTTAAGTAAGTTATTTAAGCAAAAGTCTAAATCAGTCTTTTAGCTCTGTCTTTTCTAATACATTAAAATTTTAATCTTACCTGTGCAATAATGTAAGGTCTTGTTGAGGCCACACACCTGTACTCCTAGAAAGGGAATAAAGATGCTATGGATTGCACTTTCCATTTTCAAATCCCCACGTACTCTGATTGTTCCCATCACCATACTCTGGGCTTACTTATAAAATTGATACGGGTGTGAAAGGATAAAAGCCTTGAGAAACATAAGTTTAAAGGAAAAAAATCTGACTTTTGTTACAGGTGCTATCTTGTTTTGTTAATCTCATCCACTTTTTCACAGTTTTTGTTTTTGCTTTTAAACTTTAG
Seq C2 exon
AAACGACATAAAGCTGATAATGCAGTAAACAAGAAGCAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156:ENSBTAT00000014818:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=PU(6.2=51.5)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]