MmuINT0021740 @ mm9
Intron Retention
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:68196896-68203425:-
Coord C1 exon
chr5:68203327-68203425
Coord A exon
chr5:68196942-68203326
Coord C2 exon
chr5:68196896-68196941
Length
6385 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TGTTTTGTTCTGAACTTTAGAAA
3' ss Score
7.57
Exon sequences
Seq C1 exon
CAAATTCCTGATGTGTCGCCGACCGGTCGTTACACAACACTGGTTCCTCTCTTATTTATTTTAGCTGTGGCTGCTATTAAAGAGATAATAGAAGATATT
Seq A exon
GTAAGTATCTTTTCATAAATAAATTGGTCAATAATATATTACAAATATTGTTTTCTTAAGGTATTTAATTTATAGTATAGACCCTTTTACATGCCTATTCAACTTAAAAATGAATAGAATTGCCAGGCGGTGGTGGCACAAACCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAACCAACCAACCAACCAAACAAACAGAATAGAATAGAATAGAATAGAATAGAATAGAACAGAATAGAATAGAATTACATTTCTTCTCCTGAAGTCAATTTCTAACAGAATAATATAGAGGAATTCTTAGTATGATGCTCTCTTTGGTTTTTCATGTATTAACAAAAGAAATTAACTTACATATAGAAATTAGTATGAAGAGAAAATTGTATTTGATCATTGTTTCTAATTAATTAAAATAATCTCCAGATTAACTATAAACAAGGTTTTATTTGTACTTTTTATTTTATTGGGGTTTTCACCTTATTAGATGCCTTGATTTCTTCTCATTCTATTTTAGTATTCTGAGTTTCCTCTCCATTTATCTTGTCTTATTGAAAGAAACAGTAAGTTTGCTATTTTTAGCACTCCATGGTAGAAAGAAGTCAATGTCTCCTTTGTAAAATGTACTCCCCCAATAACTTTAGACTTTCTACATTATATTTTAACTGTCTTATTTGAGGAAGCCAACACTGTGTTTTATAATGTGGGGTTTTGGTGTTTCTTATTGCCTAATAGTGTTTCTTTGCATGTCTAAAACAACCTCCTATTGGGCTTTAAAAGAGTTGGAGAGTTGGGGAGATTGAGGAAGTCTTTATCAATGCACAGCCCCAAATTTCACAAATAATAATATTACTTCTACAATGTTACTTTAACAATATTATTTAAAAGAGAAAAAAAAAACATTGAATGGAAATGCGTGCTAGAATTGGAGTCATTGGATCCTGTATCTGTGGTCTTCAGGCTCTGAGTAGCAGTAGTTGTTGAGGCTACGTGACTCTGTCCTTGTGTCTAAGACACTGTGGTCCTCTTGATTGGTAACATCCTGCTTGGACCCACAAGTTGTAGATTGGAGGACTTCCCTTTCCTTAGCCTGTTCCCCCTCACCTCCATTCTTGAAGCGATGGCTGGACTTGATAGCTCCTGGGGACTGGTCCTTACTATAATTTTTGTCTCTTTCTTTGCCTTACATACTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGCAAGCCTGATTTTTCTGGAGAACATATAATTCTTTAGTCATTTGTGCTGTTTGGTTGGGCCTTGCTTCTTTCTTTGTTTTTTACTTAATCCACTCCGTAACTTCAAGAGTTCTCCATCTATAGCACGGAAGCTGGATTTGGAGAGATGGCAGTTCAGTGCTTGAAGTTGTGTTCTGCTCCAGTAGAGAACCTGAGTTTGGTTCCAAGCACCATTCCAGGGGATAGGATATCCTCTTTTGGCCTTTGTGGGCACCCGTACTCGTGGACACATACTCACCTACAGAAACACAGTCGTACACATAATTTAAAATATGAATAAGTCTTTTGAAAAGACACATATAATGCTCTACTAAAAGAAGACTTTAAAATGCAAGATTTTAAAAGGAAAAAGGCAAGGAAGCTGGGAGGTTACGAGGTCATAGACATCGTCTCAGAAAGTGGTGGAACTAACATTCCATCCCAGTCTGGGCTTTCAACCCCGAGAGTCACCAGCAGTAATAGAACTAACATATACTATGCTTCTGGGTTCCATGCACTTGTTCCCTGTCCATTATATTTATTAGAACATATAGTAGACCGCTAAGGTATTGCCAATCTTCTTCCAAGTTTCCAAATGAAAAAGAATAGTCAGAAAGCCAAAGTTGAGGTCAACCACTCAGAGGTCAACCACTGAGAGCCAGAATGTTGGAGTCCAGTCATGGCAGTTTGGATGGAGCCTTGCATGGTAGCAGTCTTCTACCCTGCCTCTTCAATCTTCTCTCTGGTTTTATAGCAAAGCTATAATTTTGCAAACTATGTCTTTCAAAATAGACAGTAAATAAAAATGTATTCAAGGAGTATTTTTAATAGAGCAAAATACAATAATTGGATATCAGAAAGAATCTAATCAGAGAACTCTTAGAAAATATCACCTTCATGTTGTGAGGTAGTAATGATTTCACTTGCTAGCGGTATTAATGAAACTACTGTTCCTGATAGACACTGGCTATAGGGATTGTTTAACATGTAGTATATATTCAACTAATACAATTTGAGATGGTAGTCCAGAGGAAAGAACAAAAGAAGTAATAGTTTAGATAGCTAGACAAAGAACTGTTTATATGACGACTTAAAATGAGTCATATATTCACACATTCACTCAACAGAAACACAAGGACACTGCATAGGTACCTGTCATCATTTAGGATATATATTAGGATGTATTTAAACTTTGTTGTGCTGTTAATCATATTCAGTATGTCAGTGGCTTATCTATGTGTTCCACTTACTGAAAGATACTGTGGTTGCTAGATCTCTGCTGGATAGAATGGTAGGGTTCTTTGTAGCAGAGAAAGGCAGAGGGAATAGAGATGGCACTTCTCAAGTGCTTGGGCCATCAATGGTAACAACGTCTGTTTGCAGGTGGTGCAACTAATGGCATGATAAAGAGATGATGCTATCTTCGCATCCACAGAAGTATGGAACCAGATGTTTGTCGTCCTAATATAAGACTAATTATGTCTTCCCCCTATAGCTTAGAAATAAAGCACAGCTTATAGTCTAGGAAAACGTATATCCTATGTTAGCATTGTTTGTCCATTTTTAGAATAAAATCAAAGATTTGTCGATAGTGAAGACTTACTACTCCAAATCCTTTGCAAAGATTTAACATACTGTGTTGTCTTATTTTTGTGTCAAATATATATACATATATGTATATGTATGTATATATATATATATATATACACACACACAAACACTATAAACAAATATATATATAAACAAAAATAAATATATACATACCTGAAATATTCTAAATTAATAGAAGTTTCTTTCTACAACTTTTATCATAATGAATACCAATTCTTGTGGGGGAAAAAAAAATCAGAATTAGAGTCGTCTATTAGATTGGTATTTAGAACCATTAAAAACATCCTCTCCTCTTTTTTTTCCCAGAAAATTGTTAAACACTAGTAGATTTCATTCATTGCAAAATGACTAGTTATTCAGTCTGTGGGGAGCAGGCACCAAATAGCAGGCATATGCTACCGAGTAGGAGAAGTCTGACTGGAGAGGACCATCGAGTAGAAGAGCTAGACAGTAGACCAGTCACCGGGCTTGCTTTAGAATTAAGTGAAGGATGTGCTATCTTAGGGTCATGCCTCATGGACAGCAAGCTGCAAACAAGTGTCGCCTGTCCTGGGAACATCCAAAGGCCCTTTTCAGAAAAAGACAAAACATGAATTTTAGAAAAAGAACAGATTTTTTTAGCTAACAAGATATACTAGTCCAATAGCTGGCATTTAAAAAAAAATGAAGATATATTAGACCAAGTGGTGTTGACAAGATGGTGAAAAGTCTAAAAAAGAATTCAGTGAATATTTCAAAATCAAGTTGTCAAGATTTATCTCTACCCAACACAGTGCATCCCCTACTTAGTTGGCTGATTTTCTGTCTCTAACCACTTGTCTACTCCATGAACTCCAGGGATGTGGGCTCTTGTACATTGCTGTTCCCCACAGGAGTATTAATGGAGCCTGGGGGCCCAGTGAGTGTTTAGTAAATAAAAAGTGCAGGTGGCTTTGAAGTTTCCGATTTGTGAAAATGAGCCCATGTGGATTCATGGTTCCAAGTCAAGGCTAAGGTAACAGTGAGCAGCATGTTCACTCTTCAGGGCACTTTTGAAACAAGGGGACAGAAACAGAGAGAGCAGGGAAGAGGAGGATGGGGGGGTGGCTATAGGCAGCCCCAGTGATAGGCTTGGTGTGAAAAAGTTGAACTAACTTAGAGGAGAAGTGAGGAAGAGCAGAGACTAAACCTTGACTAATCTCATCTCAGAAGACCAAAGGCACATGGAAAACAACGCCCAGCAAGGAAAGGGTCTTCTCAATGAGGAGTCTGAGCCCATCACCTGCCTCAAGGACACAGCTTTCTGTCCTCTAAGTAGAATTTAACATGACATTTTCGGTTTTAAAAAAATATCAGGACTGGACACCCATGTGTCCTCATATTCATAACACTGTTCATATGACACCATTTATTGATGAACTTTCTATCCAAAGTAGAAAACAGCAGTCATCTCACCAGCTCCCAAGAACACTGGGGGAATTTGAAACCGGAGTGTACCCATATTTCTGTAAACTTTTAGTTTTAGAAGGAATCATGCTATATTTATCATACAAAATGTAAATTATTTGTGTAGGGAAAATTCGAAGCTGGATCCTTCTGTATTTCTAACACATTTGTTCTTTTGACACACTGAACTAATTTATTAGGTGGCGGAAGGTTGAAGACAGAATGCCTCTGGTGTAAGAATTTCCTGTAGGTGGAAACTAATGTCCAAGGCCTCTTTCAGTTTCATTTCTTGTTTGATTGAAATGTTTCATTAGTTATCTTTTCTCTCCATCAGTTAGAAGGCACACATAGGTGCCCATGCGAAGGAGAACATCCATGCCTCCTTTTACTATCTAAAGTTACCTTGGACTTAAAAATAATTGTTGGATCAAAACTTACTTTGGATTACTTTTAAAAATTTCTTGTGACCTTTATTAAGAAAGAAACAGCAACAAAAAATAATAATATTTGGACTCTTACAATTATATTTTTCTGTTGTTAATGTAAATATAGAAAGATTTAATTTCCTTTACATTTCAAATTACCTTCTAGTAAATTAGAAGCAATGATATTCCCATGATATTTCTTCACCATTGCACATTCGTTAGTGAGTAGTGGGCACTGAGAAAGACTTGCTGCGGAGATGGAAGAGTCACTTTCCTCACAGGGAGATGTCGGTGCTGTTTGTCTGCCATGTAGCTCAGTGGCTGACACTCTGATGACCAGATCCACCCCGTTAGTATGGACAACCCTTCCCCCACTCACCCTAGCTCCAGCTGTGGTGCAGAGGTGGGCTGACTCCACACGTTTCTCTTGGGAGATTGTTTTTCACTACGCTTCTTGAATTTCTTATTTTTCTCAAGTGGAAAACTGAGGCTCTTGTGTGTATTTCTTCTCAATTCCCACAGCAAAGTGTGGGCTTGGGCTTTCTAAGATAGGATCTTGGAAAACAAAGGATTAGTTACACTCAACACCTCAATTTGAAATTTAAAAAAAATTAAATCTTTTTATATGTCATATATATGTCTATATGTCTTTCCTGTCATATTACCTGTGTCCGGTGTGGGTTTGTTTTGTTTTTTTTTTCTCTCTCTCTCCATGCTGTAAGATTAGACAGAAGCCCCAGGATGAATGACAGGACATAGTGGCCCCTGGAGTGGCCCCTGGAGTGGCCCCTGGAGTGGCCCCTGGAGTGGCCCCTGGTCATGAGCGCCTTGTCTTTCTCCTGGCCTTCTGGTTATGTGTTGTTGCTGCTGATAGTGATAGTGTTTGTTTGTTTGTTTTATTTTACTCTTCTTCTTTATGTAACTCTTCACACTCACCTGTCTCAACTTAGACAAAACTCACCTGCTCACTCGTCCCCTCTGGGGGTGCTTTGGGGACGAAGAGGATTAGGATCTGTTCCTTGGTGGCTCCTGGTTGAACCGGGTGGCACTGTGAACACTGACGAGAAGAAACTGTTCTAGAAGGGGTGGATGAACTTGCTTCTAGCTGTCGACCGGTATCAGCGCACCTTCAAGTTAATTGGGGCACGTGCTCAGCTTAATCAAATAATGAGTTTCACAAAAAGCTGAAAATACTTGAATCCCATAATTAAGTGGTAGTTATTATACAGAGTTCTCTTGGGTAATCTTCTAAGTGAGTTATTTAAGCAGTAGACTAAATCTGGCTTTCGTTTCCTTTTCTCTAGTATCACTTAAATGTTATTCTACCTTTTTGCTATTTAAGAACTTTCTGACGGTCCCATGCCTGTGCTACCGGGGAGGAGTACTGAAGGAGGAAGCTGGGGATGGTCTAACAACACCCCAGCTAGGAGCATAGAAAGACAAAAAACCCAGAGGCCTAAGTTAAAAGATCTTTGTTTACTCTGAGTACCATTTTACGTGATGGATCTCATTCACTTTTTCACTGAGCCTTTTGTTTTGTTCTGAACTTTAG
Seq C2 exon
AAACGACACAAGGCTGATAATGCTGTGAACAAGAAACAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-Atp8a1:NM_009727:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=PU(23.6=51.5),PF121483=DUF3590=PU(18.6=33.3)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(20.8=100),PF121483=DUF3590=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: