GgaINT0067944 @ galGal3
Intron Retention
Gene
ENSGALG00000014236 | ATP8A1
Description
NA
Coordinates
chr4:70063824-70065825:+
Coord C1 exon
chr4:70063824-70063922
Coord A exon
chr4:70063923-70065779
Coord C2 exon
chr4:70065780-70065825
Length
1857 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
AGTGTGCTTTTTTGATTCAGAAA
3' ss Score
7.25
Exon sequences
Seq C1 exon
CAAATTCCAGATGTATCACCAACAGGCCGTTACACAACTTTGGTCCCTCTCTTATTTATTTTAGCCGTAGCCGCAGTGAAGGAGATAATAGAGGATATT
Seq A exon
GTAAGTATTTAATAGTCATATTTTGTAAACAATGATCAATTTCTTGTAGATTATATTGCAAAAAAAACTTTCTGAGTAATTCTCTGTTGAGCCATTCTTGATTTCTGGATGTTCTTGAAAGCTTATAATGCTGCTTATGTCAGAAGATGGAATCTTGTAGAATGTGGCGTTACAGTTTGTGTGTTTAATATGTACAGGAGTGACAGTAACATGGAAAATCAGTGACTGTTTATTATATAGATTGATTGTAGTTGGGAAATTCTCATTAATATAGTACAACCATATTTAGGTAAAATATGAGCTGGAACCAAAACTACTAAGTTCTACTGGCTCCACAGAAACCACTCAGGCTCAGAGCATTCAGAATATTGCAATTTTGTCAACGAATCAGCTAATGGAATGTTGGAAGCTACTGAATTTGTAGGAAGTTGAACTTATTTTAGAATAAAATAAGCTTCAGATAATTGTTTGGGCATGAAAAAAAAATGTATTTTCTTCCACCATTAATCCTTTATTCCCACTAGTTACGCATTTAAGTTGGGCTTAAATTTTGTCTCTGAATGAGGTACTAGGCTGTAACATTTTCTATAAAACTTGAAATAACAGCAAAGGTTTTTGGGGTTTTTTCACTACCTCCTTTCCCCAAAACAAAGAGTGGCTGGGTTTGTGTTCTGCATTTATGTTATTTGCTGCCCACTAGGCAGCTTCTCCTTACATGTCTTTTTTGCTTTCCCTTTACATAAACAAATTCCCTTTTAAAAAGCCATAAAATCAATTCACGCTCTTTCAGATATTTTTAACTGTTCTGCTGTTAATGCTTACAGACTTGCACCATCTGTCAGTGTCTAGGCAAATATAAAACTGAGGCTGCTGCTACTGTACAGAGTGTCCTTTTTAAAATTATCTCCCTCCTCTTTTACGTCATTTGTTTCTTTATGTCATTTGCTCTTTGCAATTTGAAGTGTTTAGTTTGGCATGAAGCAGAAGCCAGGGTACAGGTCCAGGGGTTTTTGTTTGTTTTTACCCATATCAGTTTTAAAAATAAAAGGTATCGTTACTAATTGCTACAGAATTGCCTAAAGGCAAGTCGGAACTTATTTTTCCTTCTATTAATTTTATATTGCCTCAGCATGTAGGTACTTCCTATAGTGTTGCAGGAATATCTGGCTGACAATGACAATAGCACTTTTTTTTTTAGCTCCATAGTAAAATATTTAGTACGTTTTCCACTTTTCTTTAGTTTTATATTTTAATTTCTTTACTCAGTGAGAGAAATAGTTATCTTCACCTGATATTAAAGCAGGTTTAATTGGCTTTTCAGTTTATTAAAATGATGCTTTCAACTGAATAACCAAACGCTTCCTTTTCTGGAGTGCAATCACAAGAAGTAGATGATGTTAGCAGGAGGCATTATTCACATACAGCATATGTTTTACATATATGCTTCAGAAGTACTAGCAAAACTTGTGACATGCAGTGCATGATTATTGACTGTTTCTAATGATTTTTTGCCCAGCATAGCTCAGAAAGCAACTGAAATTAAACTGTTACTTTTCAAGTTACAGGGAAGGACAAAGTTGTGGAGTGTAAATACATCACATCTTTGTACAAGAAATTTGTTCAAATACTGATTGCTCAGATGAGAGACATTTTAATAGAGTACTATTAGCCTAGAACTGGGTGTGACTTTCCTAATGATCAAGACTATGCAAGTAATCCATAGTTCTGTTAAAAATGTTTTTAAGTCTGTTCATTAAATGATTGAGTGCAAGCAGTAAAAACTGAGCGTTACATCTTATGTATGAGAGTTTTACCATGTCAACAGAAGTCTTAAATCAGTGTGCTTTTTTGATTCAG
Seq C2 exon
AAAAGGCATAAAGCTGATAATGCGGTGAACAAGAAACAAACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236:ENSGALT00000023022:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=PU(23.3=51.5),PF121483=DUF3590=PU(18.6=33.3)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(20.5=100),PF121483=DUF3590=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]