BtaINT0024428 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55997855-55998715:+
Coord C1 exon
chr5:55997855-55998043
Coord A exon
chr5:55998044-55998646
Coord C2 exon
chr5:55998647-55998715
Length
603 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGA
5' ss Score
6.21
3' ss Seq
TTTCTATATCTTCTTCCTAGGCA
3' ss Score
9.36
Exon sequences
Seq C1 exon
GTGTTCCTGTGGATCGGGGCTGAGGCCAACGCTGCAGAGAAGAAGAGTGCTCTGTCTACCGCCCAGGAGTACCTGCACACTCACCCCAGCGGCCGAGACACCGGCACACCGATCCTGATCGTTAAACAGGGATTCGAGCCTCCCATCTTCACAGGCTGGTTCCTGGCCTGGGACCCTCACGTTTGGAGC
Seq A exon
GTAAGAACAGAGAAGCAGGGAGATGTTCTTACTGCCAGGGTGCTCAGCACTGACACCTCAGAAGGATGGCAGGGTACTCGAGGGCCGAGTCAACCCAGGACTGTACCCCCCCACTCCCTTCTCCCCTCTCCCGTTTTTACCTTCCTTCTCTTTCGCACCCTGCACAGCAGTTAAGTCTAGTCAGCAAATTCACAGCGTGCCTCAGGAACAGGCAACGTGAGAAGCAGTAAAGTTTGTGAAGTCTGTCCACACACATTACATCCTGATAGCCAGGGGAACATTGTTGCCTGTGTTACAAATGAGGAAGCTCAGAGAAGTTACTTGTCTACAGTCACAACCAGTAGGAAGAAGCCAGGTTTTCTGACTCCTAGTCAACTGCTCTTAGTATGGAATATTGAGGAGTCACCAGCAAAGAGTGCAGATCATGTTTAAGTACCTTCCAACCATGCATAGACCTGGAAGAGGGGATTTTCCTTTCTGCTTATCTCTGAAATGTCTTCTGTCCCCTGGCTGTTTTGCTTCTCTCAAGGGTTATAGACCAGACCTGAGACGTCCCTCCACTATAAGCAGCATCTCATCCTGTTTTCTATATCTTCTTCCTAG
Seq C2 exon
GCAGGGAAATCATATGAACAGTTAAAAGAAGAGCTGGGAGATGCTGTTGCTATCACAAGAATCACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTGGATCGGGGCTG
R:
AGCAGTGATTCTTGTGATAGCAACA
Band lengths:
255-858
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]