MmuINT0022338 @ mm9
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126453366-126454088:+
Coord C1 exon
chr10:126453366-126453554
Coord A exon
chr10:126453555-126454019
Coord C2 exon
chr10:126454020-126454088
Length
465 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGA
5' ss Score
6.21
3' ss Seq
TGTTTTCTGTCTCTTCCTAGGAA
3' ss Score
12.91
Exon sequences
Seq C1 exon
GTGTTCTTGTGGATAGGAGCGGAGGCCAATGCCACGGAGAAGAAGGGGGCCCTCTCGACGGCTCAGGAGTACCTGGTCACACATCCTAGTGGCCGAGACCCCGACACACCGATTCTGATCATCAAACAGGGCTTTGAGCCCCCCACCTTCACAGGCTGGTTCCTGGCATGGGACCCTCACATTTGGAGC
Seq A exon
GTAAGAAAAATAGAAACTGAGGATGCTGTTCTGACTGCCCTGAGCCTCAGAACCCATGGGGGGGAGACATGCTGTTCCAGAGCCAAGTAAAACCAGGCTCTCACTTCCCCCAAGCCACTCCCCACACCCTTGCCTGCTTCCCTTCTCCTTGGCTTTGTCTCCCTGGCAGGGAGTCTAGTCAGTTCCCAGCTGTGTCAGCAGGAGGCAGCAAGGAACTATGATACCTGTCTACACATGGTCACAATCCTGACAGTCAGTGGAAAGTCACGGCGGGCCAGTGGCAAGAAATCAGGCATCTGATGCCCGCTCACCTGCTTGTTCTTGCAACCAAATAATGTTGGTCACTCATAACTGGACCTGAGTATACCCAAGCGCTTCATGGCTCTACCTACACACACCAGGCCTATGACGCCTGTTCCCCGTTGTCAATAAATATCTCCTCCTGTGTTTTCTGTCTCTTCCTAG
Seq C2 exon
GAAGGAAAATCATATGAGCAGCTAAAGAACGAGCTGGGAGATGCAACTGCCATTGTGCGAATCACCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-Avil:NM_009635:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTTGTGGATAGGAGCGG
R:
GTGATTCGCACAATGGCAGTT
Band lengths:
254-719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: