GgaINT1029665 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22033202-22033555:-
Coord C1 exon
chr7:22033367-22033555
Coord A exon
chr7:22033271-22033366
Coord C2 exon
chr7:22033202-22033270
Length
96 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
TAACACTTCTGTTCCTGCAGGAC
3' ss Score
10.02
Exon sequences
Seq C1 exon
ATTTTCTTCTGGATCGGGAAAGGTGCCAATGAGTCAGAGAAGGAGGCGGCAGCAGAGACAGCACAGGAGTACCTGCGGAGTCACCCCGGCAGCCGTGACCTCGACACCCCCATCATCGTGGTGAAGCAGGGCTTTGAACCCCCCACCTTCACTGGCTGGTTCATGGCCTGGGATCCCCTCTGCTGGAGC
Seq A exon
GTGAGTGAGGGGGTGGGGTCTGGAAATAGCAAGGGATACTTTTGGAGGTGGGGACAACCTGGATGCGGCCCCAGCTTAACACTTCTGTTCCTGCAG
Seq C2 exon
GACAGGAAATCCTACGATGAGCTGAAAGCTGAGCTGGGGGACAATGCCAGCATTGGGCAACTTGTGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGACAGCACAGGAGTAC
R:
ATTGTCCCCCAGCTCAGCTTT
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]