RnoINT0162860 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81707566-81710400:+
Coord C1 exon
chr9:81707566-81707754
Coord A exon
chr9:81707755-81710331
Coord C2 exon
chr9:81710332-81710400
Length
2577 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
GTTACGTACTTTATTTGCAGAAC
3' ss Score
7.9
Exon sequences
Seq C1 exon
GTCTTCTTCTGGATAGGGAAACACGCCAACGAGGAAGAGAAGAAGGCTGCAGCTACAACTGCACAGGAATACCTCAAGACCCACCCCGGAAACAGAGACCCTGAGACCCCTATCATTGTGGTGAAGCAGGGGCACGAGCCCTCCACCTTCACAGGCTGGTTCCTGGCTTGGGATCCCTTCAAGTGGAGT
Seq A exon
GTGAGTAGCTAGTCCAGCCAGTCCTGAAGACTCAGCACGCCCTCCCTCCAGGTTGCTTCAGGGCACATCTCAAAGGGAGGCCCTGGTCCAGATCCTACCAGTCTTCTCTCCCCGAACCCCCACCTTTGGGATTTTGTCAAATGGTTTTGGGTGTTTAAAACATGAAGTAAGGCTACAGTGACACCAGTAAGCTCCCTGGGGAGGGAGAGGGAAGGAATTAAAAAAAAAAATAGTGATTAGGCATGATGGTACAAGCCTGTGGGAGGTAGAGGCAGGAGAAGCAGAAATTTAAGACCATCCTTGGCTACAAAGCAAGTTTGAGGATAGCCTGGGCTAGCTGAAACCCTGTCTTTGTTGTTATTATTGTTTTAAATTTTCTTTAGATTTACTTATTTACTTTATGTCCCTGGGGAGGGAGAGGGAAGGAATTAAAAAAAAAAATAGTGATTAGGCATGATGGTACAAGCCTGTGGGAGGTAGAGGCAGGAGAAGCAGAAATTTAAGACCATCCTTGGCTACAAAGCAAGTTTGAGGATAGCCTGGGCTAGCTGAAACCCTGTCTTTGTTGTTATTATTGTTTTAAATTTTCTTTAGATTTACTTATTTACTTTATGTAAATGAGTACACTATCGCTGTCTTCAGACACACCAGAAGAGGGCACCAGATCTCATTACAGATGGTTGTGAGTCACCATGTGGTCACTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCTTGTTGTGTTTTTGACACAGGGTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACTTTGTACATCAGGCTGGCCTCCAACTCACCTCTGCCTCCAGAGTGCTTGTATTAAAGGTGTAGGCCACCAGTCCTGGAATAAGACTCTGTTTAACAACAAACCACCAACAAAACAAAACACCTAATGTTTGTAGGCACAGTAGATGAGGCATGCCTATGTTCTTAGAACTTGAAAGCAGAGATAGAAGGGTCTCAAGTTCGAGGCCAGCCTGAACTACATAGCAAAAAAACCTAAACCAAACGAAACAAAGACTGAGGTATAGCTTAGAGGTGCAGTGCTGAGCACGAACAGAGCCTGGCACCTCCTTCCCCTCACATACACAGGGCTGCGGGGGGAAGTCCAGCGCCCTGTTTCTGTGCTATGCAAAACTGTAGGAAATTGATCAGAATTAAAATTCAAGATCCAGTTCTTTACTGTGCGTAGCTGTGCTCAGCAGTCGCAGGTGGCGGCACCAAGTGTGTGAGAACAGTGTTCGGGGACAGCCCTTTCTTAGGAACGTCTTTAAGGCTACCATGGAGAGTCCTCAGTAACAACACACCGCTGCTCTAAAGGACAGACGAACTTTCCCTGGCTCTAAATTCTAAGCAAAGTGGCCCATCCATGTGCTCCTTACTGGGCATCAGGTCTCCAGGGGCACCCACTCCCCTGCCACCTGCTCCCCAGGCTTGAGGCTCTGGATGTTTGAAATTGGCAGAGCAGACAATTTTGGGCAGAGAACTTAGTTTCCTCAAATCTGCTGTTCCCTCTCCTTTTTTCTTTACTTTTGACTCTTGTTGATAGGCTGTTTCATCATCAGGATGGATTAAGCAAGTCTTCTCCCACCCTTCACCCTGCCACATATGTGTGTGTGTGATGTGTGTCTGTCACATGTGCATGTGTGTAGGCATGCATGTAGAGGCCCAAGGTTTCTATCATGGTGTCTTCTTTGATCATTCTCGATTTTGACTAGTGAGGCAGGATTTCCTTGCAAACCTCATAGGTTCATGTAGTCCAGCTAGTCAGCTCGCCCCTGGAGTGGGGCCCCTGTTTCTACTCTCTGAGGAGCTAAGAAGCTGCAGTTATCCATGGCAAACTGCTATACCTACTCAGCTTTGTGTGAGAGCCAGGGATCTGAACCCCAGTCCTCATGCTTGGGAGGCAAGCACCCTTTATCCACTGAGCCTCAGTCATTCTAATCCTCCAGCTTAGCAGTCCAGACAGCCCTCCCCTCACCTTGTATCTGCTTCCTTCTCTACCTCATTCTTCCCTCAGGAATCATAATTTACTCAGGGAATTCCGATGTGCCACTCTGGGGGTTAAGCTTTGGGTCTGTGTATAGTGGAGGCTTCTAAAACTCTCTCTCCCTTCCCTGTCTTCTGCTGGGGCTCCCCTTAAGTATATCAGATCCCCCAAGTTTCCCAGAGTCCAGTCAGGTAGGCAGTATGTCAGCGGTGCCTATGGCTGTCTGCCCAGCCTCACAGAGGGTCAGGGAAGCACATTTGTTTCTATTGCCCTATCTGGGCAAGCAAAGACAGACTCATCAGCTTGCCCTGCCTTTCTTCTCATGTGACCGCTTTGGCCTTACACTCTTTCTACGATCTCCATCATCCTTAGGACCACCTTGCTCACTTGCTTACTCTGAGCCACCGAGGTCCCCTGCCTATCTCCCCACCGGTCTCAGATCAACCTTTTTCTACTCTTGAAAGAAGACAGTCGTTTATCTCTTTTGCTGAGAACGGGGTCTGATCTGTTACGTACTTTATTTGCAG
Seq C2 exon
AACACCAAATCTTATGATGACCTCAAGGCCGAGTTGGGAAACTCTGGGGACTGGAGCCAGATTGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.365 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(64.1=79.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]