HsaINT0180187 @ hg38
Intron Retention
Gene
ENSG00000127831 | VIL1
Description
villin 1 [Source:HGNC Symbol;Acc:HGNC:12690]
Coordinates
chr2:218437124-218438726:+
Coord C1 exon
chr2:218437124-218437312
Coord A exon
chr2:218437313-218438657
Coord C2 exon
chr2:218438658-218438726
Length
1345 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
GTTATTTACTTTATGTGCAGAAC
3' ss Score
5.74
Exon sequences
Seq C1 exon
GTCTTCTTCTGGATTGGGAAACATGCCAACGAGGAGGAGAAGAAGGCCGCAGCAACCACTGCACAGGAATACCTCAAGACCCATCCCAGCGGGCGTGACCCTGAGACCCCCATCATTGTGGTGAAGCAGGGACACGAGCCCCCCACCTTCACAGGCTGGTTCCTGGCTTGGGATCCCTTCAAGTGGAGT
Seq A exon
GTGAGTGGCCTCATCCCAGCATGTCCTTCTCTAGCCCTGCCTGGAGATCAGTGCTGATTCCTGCAGGCCATTCTGTCTCTTTGGGATATATGACCTGCTGATTTAGAAAGGGGCTAGAGGAGGCTTAGAATAGAAAGTAAGGCTGCACTAAGGCCATTAGGCCTCTGGTGAGAGGGAAGAAGTCTATCAAAAACCAAGGCTAATTATAGTGCCTTGTTTGTGCACTACATTTAGAGCAAAGCTGCTGGATAGTATAGGTAAGAAATGTACTGATTACTTAAATTAAAATTAAACACAGTTCAAAATTCAGTTTGTCACTAGCCACATGTGGCAGCTGGCTACTGTGTTGGGCAGCAGAGGTGAGAATGTTCTCATCATTGCAGCAACATGGTGGATCCTCCATGCCAGCTGAAACACGTTGGTTCTAAAGGACTGACAAATGTCTTCCTGGTGCTAAATTCTAAGCAAAATGGGTCATGTGTGTGGTCCTTACCTGAGGGATGGTGTGCCAACCTCCCACGGGGTGTTTCCTAAACTGGCCCCACATAGAAGCAAGGGGCAGATACCCACAATGGAACTCCAGCAAAGGTTTTCGGTAGGAAGAAGGCCAAGGTACAGTGAAGCCTGGCCTGGTGGCTCTGGGTGCTCTAAATTGTCACAACAGATGGCTTTAGGGAAGCAGAAAGCTTAATTTCCTTAAATTTGTTGGTTTGTTTTTTTAAATTCTGCAGTTAGATGGGCTTTTAGTTTTTACTCAAGGCAGCATATCGAGATGCCAGGTTTTCTCAATCCACTTTAGTTATCACCTTTCCCTCACCTCAAGTGTGTGCTGGCTTCTCTCTCAGCCTCATTCACTCATTCATTCATTCATTCATTCAGCATAAGTGTGCTCTAGGATATGGAGATGGGACTCCTCAGAGCCATGGTCCCTTCACTCCTCTGTGGCAGGGCTCCCTTCTATTATCTGGGGGGACCCCCACCCATCCCCAGGAGCCCTGCATTTCCCAGAGCCTACATAGCCTAGGCAGGGTTCTCCATACTGCCTGTGGGTTCTTGCCCTGGCCCCTGCAGGTGGCAAAAGATCCTGCCCATCCCCATGTCAGGCTGAGCTGGGACAAATATAGCCTGCGCTCCACTTTTCTGATCTGGCAGCCCCTCTGGTCCCAATCTCACCATCTAATCTCCTTTTTCAGGGACCCTCCTCCAGCCTCAGCCTTCATATCCTCTTTCCTTTCTTACCACTAGGCCCCAGACCAGCCTTCTTTTCATTCCTGAGGGAAAATGGCTTCTCATCCATCTCCTCTGCTGAGATCCAGGTCTAATCTGTTATTTACTTTATGTGCAG
Seq C2 exon
AACACCAAATCCTATGAGGACCTGAAGGCGGAGCTTGGCAACTCTAGGGACTGGAGCCAGATCACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127831:ENST00000248444:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTGGATTGGGAAACATGCC
R:
AGCAGTGATCTGGCTCCAGTC
Band lengths:
254-1599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains