DreINT0173765 @ danRer10
Intron Retention
Gene
ENSDARG00000040466 | vil1
Description
villin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-799]
Coordinates
chr9:45113480-45114925:-
Coord C1 exon
chr9:45114737-45114925
Coord A exon
chr9:45113549-45114736
Coord C2 exon
chr9:45113480-45113548
Length
1188 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
CTTTTTTTATCCTTTTTTAGGAA
3' ss Score
12.84
Exon sequences
Seq C1 exon
GTGTACCTGTGGATCGGAAAAGGTGCCAATGACACAGAGAAGCGTGAAGCGGTGGTTACAGCACAGGAGTATCTGAAGTCCCACCCTGCTGGCCGTGACCTGGATACACCTGTTCTTGTGGTGAAACAAGGTTTTGAACCACCCACCTTTACAGGATGGTTCCACGCCTGGGACCCACAAAAGTGGAGT
Seq A exon
GTAAGTTTACTCTCTTTCAATATGACTGCTTACATCACAGTCTTGGGTGTAAACAGTTATTGTAATTAAATTAATTATCTGCTGAAAAGCTAAATTTTTTTGAATATGGTGTCATTTATTTAAATTGTTTTGCACTTATATACAGTTAAAGGCAAAATGATTAGCCCTTCAGTGAAATTTTTATTCTTTTTTTTTTATATTTCCAAATTGATGAATAATGGAGAATAAACTTTCTTATTCTTCTGGATAAAATCTTATTTCTTTTAGCTTGGCAGTTTTTTTTTTTAATTTAAGGTCTATAATTGTGAAGTGAAGTTTAGTCAAGTTTTAGATACATGAGCAAGGGTCCAAAAGCACAAAATGCAAGACAAGGAAAAACGCTAGGAAATGCTCAAGACTCAGCCATGCGTAAGTGTGCACGCGCGTGTATGCTGTGTTTATAGTCCATCTGATTAGTCCTGAACAGCTTCAGCTGTGTGTGCTCTCAATCACGGGGAATCTGGGCCAGGTGTGTGAGTGAAGTGCATAATGGGAACTGTAGTTCATTAAAGTGGCAGATTTGTAGTTCTCCAGCGATCTGCAAATGCTAAAATGCTACATCTATGGCATTTGTGACAATATTATTAGCTTCCTTGGCTATAAACAAACCTATAATAACTTCCCTACTGTAATTAACCTAACTTGCCAAGTTAACCTAATTAACCTGATTAAGCCTTTAAATTGCAATTGCAAGATGAATACTAGTATCTTGCAAAATGACTAGTCTAATATTATGTTATTTCATCATTAGAAATTAGAAATAAATAATTAAAACTATTGTTTAAAAATGTGTTAAATTAAAAAAAAAATCTATACATTAAAAAGCACCTGGTAAAAAAAAAATCACAAGAGGGCAGATAATTTTTTATCTTACTTTAGTATAACTCTTTTTCAATAAAGTTAAAAGGCCCTGCGTGATGCAAATGTAAAAAAATTAAAAAGTTTTATATGCATTTTAGGTAGTATTGATGCAAGTAATAAAAATTACTTATGGAGCAATTAAATCACTTTTCAGATAATAGTAATTTAAATACAATTTTTATGATTGAATTTGTAATGTATAACTTTATTTGAAGTAACTTACCAAACACAGCAATGTATGGCACAGTCATAAATGTTTTTTTTTTTTCTTTTTTTATCCTTTTTTAG
Seq C2 exon
GAAGGGAAATCTTACGACCAGCTTAAAGCAGAGCTTGGGGATGCAACTGATGTTATCAAAATTACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040466:ENSDART00000059228:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCTGTGGATCGGAAAAGG
R:
CAGTAATTTTGATAACATCAGTTGCA
Band lengths:
255-1443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]