RnoINT0024209 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70305849-70306584:+
Coord C1 exon
chr7:70305849-70306037
Coord A exon
chr7:70306038-70306515
Coord C2 exon
chr7:70306516-70306584
Length
478 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
AGTTTTTTTTTTCTTCCTAGGAA
3' ss Score
9.81
Exon sequences
Seq C1 exon
GTGTTCCTGTGGATAGGAGCGGAGGCCAATGCCACAGAGAAGGAGGGGGCCCTCTCGACTGCTCAGGAGTACCTGGTAACACACCCCAGTGGCCGAGACCCCGACACACCGATCCTGATCATCAAACAGGGCTTTGAGCCCCCCACTTTCACAGGCTGGTTCCTGGCATGGGACCCTCACATTTGGAGT
Seq A exon
GTAAGAAGAAAGAAACTGAGGATGCTGTTTTTACTGTCTGGAGTCTCAGAACCCATGGGGAGACGGGGTGCTGTTCCAGACCCAAGTAAAGCCAGGCTCTCACTCCCTCCCCCACCCACCCACCCATCCCCCCACCCCCCAACCCCAGCTTTGTCTCCATGGCAGGGAGCCTAGTCACGTTCCCAGCTGTGTCGGCAGGAGCAGTGAGGAGCTGTGATACCAGTGATACCATGTCTACACATGGTCACAATCCTGACAGTCTGCAAAGTCATGGTGGGCCAGTGGGAAGACCAGGCACCTGACCCACCCACCTGCTTGTTTTTACCACTAAAGAATGTTGGTCACATGCAAATGGACCTGAGCATACCCAAGTGCTTCATCGTTCTACCATGTTTTGCTTTCCCTGATAATACACACCAGGCCTATGACGCCTGTTCCCCGTTATCAGGGAATATTTCAGTTTTTTTTTTCTTCCTAG
Seq C2 exon
GAAGGAAAATCATATGAGCAGTTAAAGAACGAGCTGGGAGATGCCACTGCTATCGTGCGAATCACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCCTGTGGATAGGAGC
R:
GTGATTCGCACGATAGCAGTG
Band lengths:
254-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]