BtaINT0024434 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55989996-55990546:+
Coord C1 exon
chr5:55989996-55990106
Coord A exon
chr5:55990107-55990343
Coord C2 exon
chr5:55990344-55990546
Length
237 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
ATCCCCGGCCTTCTTTACAGGCA
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTGGAAATGAGCTGGGACAGTTTTAACCGAGGGGATGTCTTCCTGCTGGATCTTGGGAAGGTCATCGTCCAGTGGAACGGCCCAGAGAGCAGCAGTGGGGAGCGCCTGAAG
Seq A exon
GTGTGGCCCATGCGGTCGGCCCCTCCTTTCCCCCAGCTACTCTTTCCTTCTTTCCCGGCTGGCTCTTTCCTGCCCTTCCAGCCAGATGCCTGCCTTTGAGCAGCATCTGTTTCAGAGATAGGCCACATGACTGAGGCTGCAACTCAGCCTGGGGTTCCTCAGTATCAGGGTAACCCCTGTGTCTGGGATCCAGGCTGTTTCTCTTGGAGCTAAGGGCATCCCCGGCCTTCTTTACAG
Seq C2 exon
GCAATGCTTCTGGCAAAGGATATTCGGGACAGGGAGCGAGGGGGCCGTGCTGAGATAGGAGTGATCGAGGGAGACAAGGAGGCAGCCAGCCCGGAGCTGATGAAGGTCCTTCAGGACACCCTCGGCCGGCGCTCCATTATCCAACCGGCAGTCCCAGATGAGGTCATAGATCAGCAGCAGAAATCAAACATCACATTGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(48.0=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(40.0=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGTTTTAACCGAGGGG
R:
TGTGATGTTTGATTTCTGCTGCTG
Band lengths:
293-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]