MmuINT0022345 @ mm9
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126444796-126445390:+
Coord C1 exon
chr10:126444796-126444906
Coord A exon
chr10:126444907-126445187
Coord C2 exon
chr10:126445188-126445390
Length
281 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTAG
5' ss Score
-0.14
3' ss Seq
TCCTTTGGCTTCTCTGGCAGGCT
3' ss Score
8.18
Exon sequences
Seq C1 exon
GTGGAAATGAGCTGGGACAGCTTTAACCGAGGCGATGTCTTCCTGCTGGACCTTGGGATGGTCATCATCCAGTGGAATGGCCCGGAGAGCAACAGTGGGGAACGTCTCAAG
Seq A exon
GTCTAGCTCCTCCCCCTCCTCTCCTCCAGGCCTGTCGTCCAGCTGGGCTCCCCCTCTTGGGTGCCACCTTCCTTTGCCTTCTCCGCTTGCTGACCCCCAGGAGTTCAGGGGGGGGGGGACTTCTGCCTAAGCTTAGACTCTGTCTTGCAGGCACGCCAAGGGCTTGTCTTGCTCCTCAGCATCAGAGTAATGTGCCTGCCATCCTGGTGGCTCGAATGGAAGCCTTGGGGAGGGAAAGGGAGCCAGCTGAGCTGAGAGCCCTCCTTTGGCTTCTCTGGCAG
Seq C2 exon
GCTATGCTTCTGGCAAAGGACATTCGGGACAGGGAGCGAGGGGGCCGTGCTGAAATTGGGGTGATTGAGGGAGACAAGGAGGCGGCCAGCCCAGGGCTGATGACAGTCCTCCAGGATACCCTTGGTCGACGCTCCATGATAAAGCCTGCAGTTTCTGATGAGATCATGGACCAACAACAGAAATCAAGTATCATGTTATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-Avil:NM_009635:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(48.0=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(40.0=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTTTAACCGAGGCGAT
R:
ACATGATACTTGATTTCTGTTGTTGG
Band lengths:
292-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: