HsaINT0015963 @ hg19
Intron Retention
Gene
ENSG00000135407 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:14188]
Coordinates
chr12:58204132-58204709:-
Coord C1 exon
chr12:58204599-58204709
Coord A exon
chr12:58204335-58204598
Coord C2 exon
chr12:58204132-58204334
Length
264 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TCCTTGGGCTTCTTTGACAGGCT
3' ss Score
7.28
Exon sequences
Seq C1 exon
GTGGAAATGAGCTGGGACAGTTTCAACCGAGGTGATGTCTTCTTGCTGGACCTTGGGAAAGTCATCATCCAATGGAATGGCCCAGAGAGCAACAGTGGGGAGCGCCTGAAG
Seq A exon
GTATGGCTTCCTAGCCTTAGCACTTTCTCAAGTTCCTCTTTCTTCTTCCCTCCATGCTGGCTCTTCCCCAAGAATCAAGGTGGAGCCCTGCCTTTGAGTAGAATCTGTCTTGGAGACAGGCCAAGTGTGTGAGTTTGTGACTCACCCTGGACTCCTCAGCATCCAAGTAACTCCTGTGTCTGGGATCTAGGCTGTTCTCCCCAAAGACATCAGGCAGAAAGGGGTCCCAGAGGAGCTGAGGGCTTCCTTGGGCTTCTTTGACAG
Seq C2 exon
GCTATGCTTCTGGCAAAGGATATTCGAGACAGGGAGCGAGGGGGCCGTGCTAAAATAGGAGTGATCGAGGGAGACAAGGAGGCAGCCAGCCCAGAGCTGATGAAGGTCCTTCAGGACACCCTTGGCCGACGCTCCATTATCAAGCCTACAGTCCCTGATGAGATCATAGATCAGAAGCAGAAATCAACTATCATGTTGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135407-AVIL:NM_006576:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(48.0=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(40.0=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGTTTCAACCGAGGTG
R:
ACATGATAGTTGATTTCTGCTTCTGA
Band lengths:
294-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)