RnoINT0024216 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70298747-70299366:+
Coord C1 exon
chr7:70298747-70298857
Coord A exon
chr7:70298858-70299163
Coord C2 exon
chr7:70299164-70299366
Length
306 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTAG
5' ss Score
-0.14
3' ss Seq
TCCTTTGGCTTCTCTGGCAGGCT
3' ss Score
8.18
Exon sequences
Seq C1 exon
GTGGAAATGAGCTGGGACAGTTTTAACCAAGGTGATGTCTTCTTGCTGGACCTCGGGATGGTCATCATCCAGTGGAATGGCCCGGAGAGCAACAGTGGGGAACGCCTCAAG
Seq A exon
GTCTAGCTCTTCTTCCTCCTCTTCCTCTTCTTCCTCCTCCCCTCCTCCTCCTCCTCTCCTCCAGGCCTGGTGTCAAGCTGGGCTTGCCCTCTTGGGTGCTTTCTCCTTGGCCTTCTGTGCTTGCTGACCCTCGGGAGCCCAGGGGGACTCCTGCCTTAGCCTAGACTGTCTTGCAGGCAGGCCAAGGGCATGTCTCACTCCTCGACCTCAGAGTAATTTGTCCGCAATCTTGGTGGCTCCCACAGAAGGCGTTGGGAAGGAAAGGGCACCGGCTGAGCTGAAGGCCTCCTTTGGCTTCTCTGGCAG
Seq C2 exon
GCTATGCTTCTAGCAAAGGACATTCGGGACAGGGAGCGAGGGGGCCGAGCTGAAATCGGGGTGATTGAGGGAGACAAAGAGGCAGCCAGCCCAGAACTGATGACGGTTCTCCAGAATACCCTTGGCCGACGCTCCATTATCAAGCCCGCAGTTCCTGATGAGGTCACCGATCAGCAGCAGAAGTCAACCATCATGTTGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.191
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(48.0=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(40.0=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAATGAGCTGGGACA
R:
ATGGTTGACTTCTGCTGCTGA
Band lengths:
302-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]