BtaINT0024435 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55990344-55991107:+
Coord C1 exon
chr5:55990344-55990546
Coord A exon
chr5:55990547-55991028
Coord C2 exon
chr5:55991029-55991107
Length
482 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TAACTTCTCCCCTTCTCCAGTGT
3' ss Score
8.24
Exon sequences
Seq C1 exon
GCAATGCTTCTGGCAAAGGATATTCGGGACAGGGAGCGAGGGGGCCGTGCTGAGATAGGAGTGATCGAGGGAGACAAGGAGGCAGCCAGCCCGGAGCTGATGAAGGTCCTTCAGGACACCCTCGGCCGGCGCTCCATTATCCAACCGGCAGTCCCAGATGAGGTCATAGATCAGCAGCAGAAATCAAACATCACATTGTATCA
Seq A exon
GTGAGTAGCTAAGGCTGGCTGCTGATTGGAAGCTGGGGTCAGGGGAAGGTGGCCCCCAGAGAAACAAGCACTTCTGCTTGGCTTCATTTGGGGTGCAGGCACCTGGGTTTCTTTCAGTCTTTCTTTGAATGCAGCTTCTACAAGGAGTTTGTTGTTCCCTGAGCAGCTACTGTCTGCTCTTGTTAGCAATGATTCCTGATCTCTGGGAGAGAATGTTCCTTGACTCAAGTCTATGCATCCCAGGGGTGTGGACAGGATAATGTCAGGGGAAGGGTAGAGATAATATTCAGGAAAGAGATGCACAGAAGGCTCCCCCAGACAACAGTGTCCATCACATCCCAGTCCGCACTCATGCCATGCCTGTCGCAAGAAGTCAAACTCTACCCAGAAACTCCATCCTAAGACCAAGCCAGGAAATAACAAACTGACCACATGATGCTTTGTAGAAGGGAATGTACAGGCTAACTTCTCCCCTTCTCCAG
Seq C2 exon
TGTCTCGGATTCATCTGGGCAGCTGGTGGTCACAGAGGTAGCGACGAGGCCTCTGGTCCAGGACTTACTGAATCCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.0=44.1)
A:
NA
C2:
PF0062617=Gelsolin=PU(21.8=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAAAGGATATTCGGGACA
R:
AGGATTCAGTAAGTCCTGGACCA
Band lengths:
270-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]