GgaINT1029672 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22035740-22036516:-
Coord C1 exon
chr7:22036314-22036516
Coord A exon
chr7:22035819-22036313
Coord C2 exon
chr7:22035740-22035818
Length
495 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CCTCTCTCTCTCTCCACCAGTGT
3' ss Score
10.12
Exon sequences
Seq C1 exon
GCAATGACCCTGGCCAAGGACATTCGGGACCGAGAGCGTGCGGGACGTGCGAAGGTTGGCGTGGTGGAGGGGGAGAATGAGGCGGCCTCACCTGAGCTGATGCAGGCCTTGACACATGTGCTGGGGGAGAAGAAGAACATCAAGGCAGCCACACCCGATGAACAAGTTCACCAGGCGCTCAACAGTGCCCTCAAGCTCTACCA
Seq A exon
GTGAGTAGCTGGGGATGGGTCTTACCTGTGGAGGCATCTCGTAGGGCTGCGAGGTGTCAGGGTGGTGCCATGATGTTGGCAGCAGGGAGTCTCACAAGTCCCATCCCTATGGATGGCAAGGGAGAAGGGAAAAATCCACCACAGAGGGACAGGTCCTTTGGGTGCCGCGGGAGCAGTGGGATTCCCCAGTGCCAATGGGGTTGGTACCCAACAGCTAGTACGGAGATGCTTGTGCAAATGTCATGGATGCCTTCAAACACAGTGCCATGTCCCCAGTAAAGCTGACTGTCCCCATCCCGTCTGACATCCCTTTGTCCCTCACCAGCTCTTCTGTGGTTGGGGTGGCAGTGGGGATAGAGGTGATGGCAATGGAAGTGATGGAGATAGAGATGGAAGTGGAGCTGGGCCCCCCTACCCCGCCACCCCCATGTAGCGTTGGGGAGGATATTTTCCAGCACTGTTTCTATCCTTCTCTCCTCTCTCTCTCTCCACCAG
Seq C2 exon
TGTCTCTGATGCCAGTGGGAACCTGGTCATACAAGAGGTAGCAATTCGCCCCTTGACTCAAGACATGCTCCAGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.0=44.1)
A:
NA
C2:
PF0062617=Gelsolin=PU(21.8=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGACCCTGGCCAAGG
R:
CATGTCTTGAGTCAAGGGGCG
Band lengths:
270-765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]