BtaINT0159753 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107154853-107155249:+
Coord C1 exon
chr2:107154853-107155055
Coord A exon
chr2:107155056-107155170
Coord C2 exon
chr2:107155171-107155249
Length
115 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
GCCGCATCTTTGTCCTGCAGTGT
3' ss Score
7.58
Exon sequences
Seq C1 exon
GGCATGAACCTGGCCAAGGAGATCCGCGACCAGGAGCGGGGTGGGCGAACCTACGTGGGCGTGGTGGACGGGGAGGACGAGAAGGCCTCACCACAGCTGATGGAGATCATGAACCACGTGCTGGGCCAACGGAAGGAGCTGAAGGCCGCTGTGGCCGACACGGTGGTGGAGCCGGCCCTCAAGGCTGCCCTCAAGTTGTACCA
Seq A exon
GTGAGTGCCCGGCTGCGTGGGGCTCCTCCTGGCACAGGGGGTACCTCCTGGGGGAGGAGACCCCGGGGCGAGTGTCCAGCATCCTCCTTGTCTATGCCGCATCTTTGTCCTGCAG
Seq C2 exon
TGTGTCTGACTCAGAGGGAAAGGTGGTGGTCAGAGAAATCGCCACGCAGCCACTCACACAAGACCTGCTCAGTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543:ENSBTAT00000024683:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.0=44.1)
A:
NA
C2:
PF0062617=Gelsolin=PU(19.7=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGATCCGCGACCAGG
R:
GAGCAGGTCTTGTGTGAGTGG
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]